Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1351g00001 ATGCACATCATATTCATCAATCTAGCTATAACAACCTTTCATTCCTTCATCCAAAAAATAATGGCTTTCAAGAATTTCTCCTATCTACTTTCCATGTTCTTGATCTTTGTTTCATTGTGTATAGCAAATGCTGTTCCACCAGAAACCATTTGCAACTCTATTGTAAACCCTACTTATTGTAAAACCGTTATCGGTAATCAAAATGGAAACATCTATGACTACGGTCGCATTTCTATTCAAAAATCGTTGTCACAATCTCATAAGTTCATCAACTTATTGGACTCATATCTTCAAGGTAGCTCGTCTTTGACTCAATCCACAATTCACGCTCTCGAAGATTGTCGATTCCTTGCTAGCCTAAGTTTTGAATACTTATCAAACACCTATGCCACAACAAATACATATAGTAATGTTCTTCCAACTTCTCAAGCAGAAGATTTCGAAACGTTTCTTAGTGCAGTTTTGACTAACCAACAAACATGTTTGGACGGTCTAGACACTATAGTTTCTTCTGATCACAGAGTGAAGAACGACTTATCGTTATCACTCTCTAATGAGAAAAAACTTAATAGTGTAACCCTAGCCTTGTTCTTGAAAGGTTGGATGCCAGAGAAAAAAATAAGAACATCATGGCCACAAAGCGGCAAACACTTGAATTTCAAAAATGGCCGGTTACCATTGAAGATGTCAAATAAAGCACACGCTATTTATGATTCAGCTAGACGCCATGGGCGAAAACTAGTTCAAACTCAAACAGATGAAAATAGTGTTGTGGTAAGTGATATTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTTAGCACTATCAATGAAGCAATTGCTGCTGCACCGAATAACACAGTTGCTAGTGATGGATACTTTCTCATTTTTATCACTGAAGGTGTGTATCAAGAGTATGTATCTATTGACAAAAAGAAGAAGTACTTGATGCTGGTTGGAGAAGGAATCAACAAAACAGTTATCACAGGAAATCACAATGTTGTTGATGGTTTCACAACATTCAATTCTGCCACATTTGCTGTGGTAGGTCAAGGGTTTGTGGGAGCTAATATAACATTTCGCAACACGGCTGGACCAGGAAAACATCAAGCAGTTGCAATGAGAAGTGGGGCTGACATGTCCACATTCTACCGTTGCAGCTTTGAAGGGTATCAAGACACACTATATACACATTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGAACAGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAACTGTAACATCTATCCTCGTCTTCCTCTTAATGGACAATTCAATACCATCACAGCGCAAGGTCGAACCGATCCAAATCAAAACACAGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCTAATGTTGGAACAGTTGAAACATATTTAGGGAGACCATGGAAGAATTATTCAAGGACGGTAGTTATGCAATCATCTATGGATAGTTTCATAAATCCTTCTGGTTGGCATATATGGGATGGTGATTTTGCATTGAGTACTTTGTATTATGCAGAATATGATAATAGAGGAGGTGGTTCAAGCACTGCAAATCGAGTCACATGGTCTGGTTATCATGTTATTGATGCTTCGGATGCAGCAAATTTCACAGTCTCTAATTGTTGA 1674 0.3751 MHIIFINLAITTFHSFIQKIMAFKNFSYLLSMFLIFVSLCIANAVPPETICNSIVNPTYCKTVIGNQNGNIYDYGRISIQKSLSQSHKFINLLDSYLQGSSSLTQSTIHALEDCRFLASLSFEYLSNTYATTNTYSNVLPTSQAEDFETFLSAVLTNQQTCLDGLDTIVSSDHRVKNDLSLSLSNEKKLNSVTLALFLKGWMPEKKIRTSWPQSGKHLNFKNGRLPLKMSNKAHAIYDSARRHGRKLVQTQTDENSVVVSDIVVVSQDGSGNFSTINEAIAAAPNNTVASDGYFLIFITEGVYQEYVSIDKKKKYLMLVGEGINKTVITGNHNVVDGFTTFNSATFAVVGQGFVGANITFRNTAGPGKHQAVAMRSGADMSTFYRCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLNGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPNVGTVETYLGRPWKNYSRTVVMQSSMDSFINPSGWHIWDGDFALSTLYYAEYDNRGGGSSTANRVTWSGYHVIDASDAANFTVSNC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1351g00001 557 FunFam Pectinesterase 256 557 - -
Vivi1351g00001 557 Pfam Pectinesterase 263 556 IPR000070 GO:0030599|GO:0042545
Vivi1351g00001 557 CDD PMEI-like_3 49 201 - -
Vivi1351g00001 557 PANTHER PECTINESTERASE 37 556 - -
Vivi1351g00001 557 FunFam Pectinesterase 48 199 - -
Vivi1351g00001 557 Pfam Plant invertase/pectin methylesterase inhibitor 48 195 IPR006501 GO:0004857
Vivi1351g00001 557 Gene3D - 257 557 IPR012334 -
Vivi1351g00001 557 SMART PMEI_2 42 196 IPR006501 GO:0004857
Vivi1351g00001 557 SUPERFAMILY Pectin lyase-like 258 556 IPR011050 -
Vivi1351g00001 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 199 IPR035513 -
Vivi1351g00001 557 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Vivi1351g00001 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 197 IPR035513 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1351g00001 28 556 Carbohydrate Esterase AT4G02330 57.664 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1351g00001 K01051 - gmx:100813051 796.964