Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1350g00003 ATGGCTATGATCCAAAGAAAGCTCTTCCCAACAGAAACTACCTCAAACCAAACTTCAGATTGTTATGGCTTTTGTGACCCTTTATGTCCTTCAAATTGTTACACTAACACAAATTACTATTTCACACCCCCACCTTTAGAACACACTACACAAGTTAACCATATTGGCTCCTACTTCATCATCCTCATTTCATTATTCTCATTGATTTTTATCATCATTGTTTTCTATCTCATCAAAGTTAAATGCTACAATGAAATGTGTGGTTGGAGAAGCAATAACCCGGCTCGGTCTCAAGCCGTTAACTCCGAAGAGCTTCTCAATGAAAATCGCGATCACAATCATGATCACCCCGTGTGGCTCATCGCTACGGTTGGTTTGCAACAATCGGTTATAAACTCGATTACGGTTTGCAAGTATAGAAAAAACGAAGGGCTAATCGAAGGAACGGAATGTTCGGTTTGCTTGAATGAGTTTCATGAAGATGAAACGTTGAGACTATTGCCAAAGTGTAGTCATGCTTTTCACATTTCTTGTATTGATACTTGGTTGAGATCTCATACGAATTGTCCTCTTTGTCGAGCCGGTATTGTTTCCAACAACGTTACTCACGAAGTAACGTTGTTGAATTCGGAGCAAGAAAATAACAACTTGGGAAGAAATCAAGAGACTCAAGTGGAGAATCCAATGAATGATCAAGAAAATGTGTTAAACAATATTGTTATCGATGTTGGATTTGATAACATGGTTGGAGACTCAAGTGATGAATCATCTGAATCTAGAAGATATCATCAAGTTGTTAAGAAAGAGGTGCAAAAGGTTAGTGTTTGGAAGGTTATTACACAAAAAAGTAGCAAAACAATGCGTCGATGTTCGATTGAAGAGCTTTTGCATGTAAGGCCGGTGGCTATGAAAAAGTCTTTAAATCTACATGGAAGGAAGAGTTTTAAAAAGAAATTTGCGACTACATTTTGGACTGCAACATCATGA 987 0.3779 MAMIQRKLFPTETTSNQTSDCYGFCDPLCPSNCYTNTNYYFTPPPLEHTTQVNHIGSYFIILISLFSLIFIIIVFYLIKVKCYNEMCGWRSNNPARSQAVNSEELLNENRDHNHDHPVWLIATVGLQQSVINSITVCKYRKNEGLIEGTECSVCLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVSNNVTHEVTLLNSEQENNNLGRNQETQVENPMNDQENVLNNIVIDVGFDNMVGDSSDESSESRRYHQVVKKEVQKVSVWKVITQKSSKTMRRCSIEELLHVRPVAMKKSLNLHGRKSFKKKFATTFWTATS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1350g00003 328 SMART FANCL_C_2 147 200 - -
Vivi1350g00003 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 202 IPR013083 -
Vivi1350g00003 328 SUPERFAMILY RING/U-box 141 199 - -
Vivi1350g00003 328 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Vivi1350g00003 328 PANTHER RING-H2 FINGER PROTEIN ATL16 43 288 IPR044600 GO:0016567|GO:0016740
Vivi1350g00003 328 FunFam RING-H2 finger protein ATL54 126 199 - -
Vivi1350g00003 328 Pfam Ring finger domain 150 193 IPR001841 -
Vivi1350g00003 328 CDD RING-H2_EL5-like 150 193 - -
Vivi1350g00003 328 SMART ring_2 151 192 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1350g00003 6 260 C3H Transcription Factor Family AT1G72220 39.384 5.16e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1350g00003 - - psat:127118731 523.857