Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1345g00004 ATGGTTATTCAAACTTCACTTCTGTTCTTCTTCACACTTCATCTATCAGTAACACTTGTAACTTCAGCAAAATTAACTATAATTAACCAATGCAATTACACGGTGTGGCCAGCCTCATACCCTACCGATGAAGCCAGTGAATCACCCACCGGATTCATTTTAAAACCCGGCGAGAATTCCATAATCACAACCTCCGATAAATGGACCGGCCGCTTATGGGGCCGGACTCTCTGCAAAACAGATTCCACCACCGGAAACTTCTCCTGTGTCACTGGCGATTGCGGCTCAGGAAAGATTGCATGTGACAGAAGCGGATCACCGCCTTTGACGCTGGCGGAGTTCACTTTCAATGGTCCCACCAGTCAAGATTTTTACGATGTCAGTTTAGTTAACGGTTATAACGTTCCATTGAATATTGTCCCATTGGATAGTTCTCGAGTGTGTAACAGCACGGGTTGTCCATTGGATATTGTCCCATTGGATAGTTCTCGAGTGTGTAACAGTACGGGTTGTCCAACCGATCTGAACGCGGTGTGTCCGACGGAGTTGAAGCTAATGAAAAATGGGAAATTCGTGGCGTGTCGGGGTCCCTGTGCTGTTGGGAATCATTCAACTGCAGAGACATGTGGGCCGAGTTTTTATTCTAAGATTTTCAAGAAGGCGTGCCCTGAAGCCTTTAGCTATCCGGAGGATTCGGCCAGCACGTTCACATGTTCCGCGACCGATTACCAGGTCGTCTTTTGTCCCTCCAATAACACCAGCTTAAATTCAGTAGATCAAGGTGGCAGTGTGAGTGTTGGTGAGTCACTTGTTGCGGGTGGTGGAACAGCTAGATGGCTCTCTCCGTCCGGAGATTTTGCATTTGGGTTTTACCAAATTCCTGGTGAGCTTTTCTTACTAGCTATATGGTATGACAAGGTACAAACTGATGCAGTCATTTGGCATGCAAATGGAGATAGCCCTGCACAGAAGGGTTCAAGATTGGTATTAAATGGCTCTAGTGGCTTAGTGCTTACGAACCCTCAAGGTTTAGAGCTATGGAGATCGGATTTCAGATCAGGTACAATTTTTAAAGGTATAATGAATGATGATGGAAACTTTCAATTGCAAGACAAAAACTCCGGCACAATTTGGGACAGGTTTAGTCATCCTACAGACACCATTGTACCTAATCAGGTAATGGAGTTAAATGGAAATCTTTCTTCACGACAAGGAGCGTTTAACTTCTCACGTGGAAGGTTTAAACTTCATCTACAAGAGGATGGGAATCTTGTGCTTAATCTTATAAATTTGCCGAGCAACTACAGTTACTATCCTTACTACAGTTTTGGCACTAGTGATGCTAAGAATCAAACAAATGTTGGCCAACGCTTGATATTTGACAGATCAGGTTTCTTATACATTGAGAAAAAAAGTGGAGATAATTTTTCTATAAGCAACCAGAACGGGACATTCTCAACCGATAACTTCTACTACAAGGCAACAATTAATTATGATGGAGTTTTCACCGTAGCATTTTACCCTAAAGATCCAAAAAGAGGACAGAATTGGGTCATTGCGAAGACGATACCAGAAAACATATGCTTGTATTCTACATTCACAGACGGTGAAGGTGTATGTGGGTTTAATAGCATTTGCACCCTTACAAATGACCAAAGGCCGAATTGTACCTGCCCAGACGGATATTCTCCAATTGATTCAAATAACATGTATGCTGGCTGCATACCGAATTTCCAAGTCATTTGTCAAGCAGGTGGGAACAAGGGTTGGCAAGATGATATGTATACAATGAAGGAATTGCCAAATACAGATTGGCCTAAATCTGATTATGAAATAATCAGTCCATCTACTTTGCAAGAATGTAAGGAATCATGTTTGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAACCAAAGTTCTTGCTGGAAGAAGAAACTCCCACTATCTTATGGAAGAAATGATCAGGTAGTAAAAGGAATTTCTGTCATGAAATTGATGAAAAATGATCCTTTTTCTTCCTTGCCAAATCAAAAGAAAGATCATGAAACCTTGATTATTGTGATTTCAGTCCTTTTAGGAAACTCTGTGCTTGTCATTTTGACATTACTCGGGGCAATGTTTTTTGGGTTTCCTGACAACCGCAAGAAGATCAAGAGTTTTAGAACCAACAAAAATGTTGTTGACACTAACCTGCGTAATTTTAGTTTCAAGGAAATCGTTGAAGCAACAAGTAACTTCAAAGAAGAACTTGGAAGAGGGTCTTGTAGCATTGTGTACAAAGGAACAATAGAGATGATGGTCAATGTAGCAGTTAAGAAACTGGATAAATTGCTTCAAGATAGGGATAAGGAATTTCAGACTGAAATGAGTGTGATAGGACAAACTCATCACCGCAACCTTGTCCGACTTCTTGGATATTGCAATGAAGGACAACATCGGATTTTGGTATACGAGTTAATGAGCAATGGAACTTTAGCAAGTTTCATTTTCACAACTTTAAAACCAAATTGGAACCAACGGTTCCAGATTGTTCTTGGAATCGCAAGAGGTCTTGTTTACTTGCATGAGGGATGTTGCACCCAAATCATCCATTGTGATATTAAACCGCAAAATATACTTCTGGATGATCAATACAATGCTAGGATTTCAGATTTTGGATTAGCAAAGCTGTTGCTGATTAATCAGAGCCACACCGAGACTGGAATTAGAGGAACCAAAGGGTATGTTGCGCCGGATTGGTTTAGGAGTGCACCAATCACTGCAAAGGTTGATACTTATAGTTTTGGTGTATTGTTGTTAGAGATCATTTGTTGTAGGAAAAATGTAGAGAAGGAATTCGTCAATGAAGAACAAGGGATTTTAACTGATTGGGCTTATGATTGCTATAAGACCAAAAGACTTCACAATCTCTTAGAAAATGATAATGAGGTCGGAAATGACACGATGAGTTTGAAAAAGTTAGTCATGATTTCTATTTGGTGTATTCAGGAAGATCCTTCTCGTAGACCATCAATGAAAGAGGTTTTACTGATGTTAGAAGGAATTGTTGAAGTTGTGGCTCCCCCAAGTCCTCATCTCTATGGTTCTGTAAGCTGTGCTGCAGCAGTTCCTAACAAGTTGCTGCAACTAGTGTTGCGATTATTGGATACTTACTTGAATTCTTGGCAGGATTCCGCAGAGGAAAACTGTTTTAGCTTCCATATGGTTATGCAAAGTTCACTTCTGTTCTTCTTCACACTTCATCTATCAATAACAGTTGTAACTTCAGCGAAATTAACTATAATTAACCAATGCAATTACACGGTGTGGCCAGCTTCATTAAGTAACAGCGGAAACGCAACATCCACCGGATTCATTTTAAAACCCGGCGAGAATTCCACAATCACAACCTCCGATATATGGACCGGCCGCGTATGGGGCCGGACTCTCTGCACAACAGATTCCACCACCGGAAACTTTTCCTGCGTCACCGGCGATTGCGGCTCAGGAAGGATTGCATGTGATCAACGCGGATCACCGCCTTTGACCCTGGCAGAGTTCGGTTTGAACGATCAAGATTTTTACGATGTCAGCTTAGTTGACGGTTATAACGTTCCAATGAATATTGTTCCGTTGGATAGTTCAGGAAAGTGTAACACCACGGGTTGTTCAACCGATCTGAACGCGATGTGTCCGACAGAGTTGAAGACAATTAATAATGGAAAACTTGTGGCGTGTCAAGGTCCTTGTGCTGCTTTTAATTTGCAGTTTTTCTGTTGTGCTGGGAATCATTCAACGCCAGAGACATGTGAGCCGAGTGTGTATGCTAAGATTTTCAAGACGGCGTGCCCTGCAGCCTATAGCTATCCGTTTGACATTACAACCAGCACGTACACTTGTTCCTCGACCGATTACCATGTCGTCTTTTGTCCTGCCAATAACACCAGCTTAAATTCAGTAGATCAAGCTGGCAGTGTGAGTGTTGGTGAGTCACTTGTTGCGGGTGGTGGAACAACTCGATGGCTCTCTCCGTCTGGAGATTTTGCATTTGGGTTTTACCAAATTCCCAGTGAGCTTTTCTTACTAGCTATATGGTATGAAAAGGTACAAACTGATGCAGTCATTTGGTATGCAAATGGAGACAGCCCTGCACAGAAGGGTTCAAGATTGGTATTAAATGGCTCTAGTGGCTTGGTGCTTACGAACCCTCAAGGTTTAGAGCTATGGAGATCAGATTTCAGATCAGGTACAATTTCTAAAGGCATAATGAAGGATGATGGAAACTTTCAATTGCAAGACAAAAACTCCGGCACAATTTGGGACAGCTTTAGTCATCCTACAGACACCATTGTACCTAATCAGGAAATGGAGTTAAATGGAAATCTTTCTTCACGACAAGGAGCGTTCAACTTCTCACGTGGAAGGTTTAAACTTCATCTACAAGAGGATGGGAATCTTGTGCTTAATCTTATAAATTTGCCGAGCAACTATAGTTACGATCCTTACTACAGTTCTAGCTCCAACGGTGATGTTAAGAATCAAACAAATGTTGGACAGCGGTTGATATTTGACAGATCAGGTTTCTTATACATTGAGAAAAAAAGTGGAGATAATTTTTCTATAAGCAACCAGAACGGGACATTCTCAACCGATAACTTCTACTACAAGGCAACAATTAATTATGATGGAGTTTTCACCGTAGCATTTTACCCTAAAGATCCAAAAAGAGGACAGAATTGGGTCATTGCGAAGACGATACCAGAAAACATATGCTTGTATTCTACATTCACTGACGGTGAAGGTGTATGTGGGTTTAATAGCATTTGCACTCTTACAAATGACCAAAGGCCGAATTGTACCTGTCCTGACGAATATTCTCTAATTGATTCAAATAACGTTTATGCTGGCTGCATACCGAATTTTCAAGTCATTTGTCAAGCAGGTGGGAACAAGGATTGGCAAGATGATATGTATACAATGAAGGAATTGCCAAATACAGATTGGCCTAAATCTGATTATGAAATAATAAGTCCATCCAGTTTGCAAGAATGTAAAGATTCGTGTTTGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAACCAAAGTTCTTGCTGGAAGAAGAAGCTCCCACTATCTTATGGAAGAAATGATCAGGCAGTAAAAGGAATTTCTGTCATGAAATTGATGAAAAATGATCCTTTTTCTTCCTTGCCAAATCAAAAGAAAGATCATGAAACCTTGATTATTGTGATTTCGGTTCTTTTAGGAAGCTCTGTGCTTGTCATTTTGACATTACTCGGGGCAATGTTTTTTACGTTTCCTTACAACCGCAAGAAGATCAAGAGTTTTAGAACCAACAAAAATGTTGTTGACACTAACCTGCGTAATTTTAGTTTCAAGGAAATCGTTGAAGCAACAAGTAACTTTAAAGAAGAACTTGGAAGAGGGTCTTGTAGCATTGTGTACAAAGGAACAATAGAGATGATGGTCAATGTAGCAGTTAAGAAACTGGATAAATTGCTTCAAGATAGGGATAAGGAATTTCAGACTGAAATGAGTGTGATAGGACAAACTCATCACCGCAACCTTGTCCGACTTCTTGGATATTGCAATGAAGGACAACATCGGATTTTGGTATACGAGTTAATGAGCAATGGAACTTTAGCAAGTTTCGTTTTCACAACTTTAAAACCAAATTGGAACCAACGGTTCCAGATTGTTCTTGGAATCGCTAGAGGTCTTGTTTACTTGCATGACGGATGTTGCACCCAAATCATCCATTGTGATATTAAACCGCAAAATATACTTCTGGATGATCAATACAATGCTAGGATTTCAGATTTTGGATTAGCGAAGCTATTGCTGATTAATCAGAGCCACACCGAAACTGGAATTAGAGGAACCAAAGGGTATTTTGCACCGGATTGGTTTAGGAGTGCACCAATCACTGCAAAGGTTGATACTTATAGTTTCGGTGTATTGTTGTTAGAGATCATTTGTTGTAGGAAAAATGTTGAGAAGGAATTCGTCAACGAAGAACGAGGGATTTTAACCGATTGGGCTTATGATTGCTACAAGACTAAAAGACTTCACAATCTCTTAGAAAATGATAATGAGGTCGGAAATGAAACAATGAGTTTGGAAAAGTTAGTCATGATTTCTATTTGGTGTATTCAAGAAGATCCTTCTCTTAGGCCAACAATGAAAGAGGTTTTACTGATGTTGGAAGGAATTGTTGAAGTTGTGGCTCCCCCAAGTCCATATCTCTATGGTTCTGTAAGTTGTAATTAA 6270 0.4033 MVIQTSLLFFFTLHLSVTLVTSAKLTIINQCNYTVWPASYPTDEASESPTGFILKPGENSIITTSDKWTGRLWGRTLCKTDSTTGNFSCVTGDCGSGKIACDRSGSPPLTLAEFTFNGPTSQDFYDVSLVNGYNVPLNIVPLDSSRVCNSTGCPLDIVPLDSSRVCNSTGCPTDLNAVCPTELKLMKNGKFVACRGPCAVGNHSTAETCGPSFYSKIFKKACPEAFSYPEDSASTFTCSATDYQVVFCPSNNTSLNSVDQGGSVSVGESLVAGGGTARWLSPSGDFAFGFYQIPGELFLLAIWYDKVQTDAVIWHANGDSPAQKGSRLVLNGSSGLVLTNPQGLELWRSDFRSGTIFKGIMNDDGNFQLQDKNSGTIWDRFSHPTDTIVPNQVMELNGNLSSRQGAFNFSRGRFKLHLQEDGNLVLNLINLPSNYSYYPYYSFGTSDAKNQTNVGQRLIFDRSGFLYIEKKSGDNFSISNQNGTFSTDNFYYKATINYDGVFTVAFYPKDPKRGQNWVIAKTIPENICLYSTFTDGEGVCGFNSICTLTNDQRPNCTCPDGYSPIDSNNMYAGCIPNFQVICQAGGNKGWQDDMYTMKELPNTDWPKSDYEIISPSTLQECKESCLQDCLCVLVSFNQSSCWKKKLPLSYGRNDQVVKGISVMKLMKNDPFSSLPNQKKDHETLIIVISVLLGNSVLVILTLLGAMFFGFPDNRKKIKSFRTNKNVVDTNLRNFSFKEIVEATSNFKEELGRGSCSIVYKGTIEMMVNVAVKKLDKLLQDRDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFIFTTLKPNWNQRFQIVLGIARGLVYLHEGCCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVNEEQGILTDWAYDCYKTKRLHNLLENDNEVGNDTMSLKKLVMISIWCIQEDPSRRPSMKEVLLMLEGIVEVVAPPSPHLYGSVSCAAAVPNKLLQLVLRLLDTYLNSWQDSAEENCFSFHMVMQSSLLFFFTLHLSITVVTSAKLTIINQCNYTVWPASLSNSGNATSTGFILKPGENSTITTSDIWTGRVWGRTLCTTDSTTGNFSCVTGDCGSGRIACDQRGSPPLTLAEFGLNDQDFYDVSLVDGYNVPMNIVPLDSSGKCNTTGCSTDLNAMCPTELKTINNGKLVACQGPCAAFNLQFFCCAGNHSTPETCEPSVYAKIFKTACPAAYSYPFDITTSTYTCSSTDYHVVFCPANNTSLNSVDQAGSVSVGESLVAGGGTTRWLSPSGDFAFGFYQIPSELFLLAIWYEKVQTDAVIWYANGDSPAQKGSRLVLNGSSGLVLTNPQGLELWRSDFRSGTISKGIMKDDGNFQLQDKNSGTIWDSFSHPTDTIVPNQEMELNGNLSSRQGAFNFSRGRFKLHLQEDGNLVLNLINLPSNYSYDPYYSSSSNGDVKNQTNVGQRLIFDRSGFLYIEKKSGDNFSISNQNGTFSTDNFYYKATINYDGVFTVAFYPKDPKRGQNWVIAKTIPENICLYSTFTDGEGVCGFNSICTLTNDQRPNCTCPDEYSLIDSNNVYAGCIPNFQVICQAGGNKDWQDDMYTMKELPNTDWPKSDYEIISPSSLQECKDSCLQDCLCVLVSFNQSSCWKKKLPLSYGRNDQAVKGISVMKLMKNDPFSSLPNQKKDHETLIIVISVLLGSSVLVILTLLGAMFFTFPYNRKKIKSFRTNKNVVDTNLRNFSFKEIVEATSNFKEELGRGSCSIVYKGTIEMMVNVAVKKLDKLLQDRDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFVFTTLKPNWNQRFQIVLGIARGLVYLHDGCCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYFAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVNEERGILTDWAYDCYKTKRLHNLLENDNEVGNETMSLEKLVMISIWCIQEDPSLRPTMKEVLLMLEGIVEVVAPPSPYLYGSVSCN 2089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1345g00004 2089 ProSiteProfiles Thaumatin family profile. 1089 1304 IPR001938 -
Vivi1345g00004 2089 Pfam D-mannose binding lectin 1367 1454 IPR001480 -
Vivi1345g00004 2089 Pfam D-mannose binding lectin 312 399 IPR001480 -
Vivi1345g00004 2089 FunFam Thaumatin-like protein 1a 1090 1304 - -
Vivi1345g00004 2089 CDD B_lectin 1318 1439 IPR001480 -
Vivi1345g00004 2089 ProSiteProfiles Protein kinase domain profile. 744 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00004 2089 SUPERFAMILY alpha-D-mannose-specific plant lectins 298 427 IPR036426 -
Vivi1345g00004 2089 Gene3D Thaumatin 23 249 IPR037176 -
Vivi1345g00004 2089 Gene3D Thaumatin 1090 1304 IPR037176 -
Vivi1345g00004 2089 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Vivi1345g00004 2089 Gene3D - 256 382 IPR036426 -
Vivi1345g00004 2089 Gene3D - 1315 1438 IPR036426 -
Vivi1345g00004 2089 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 820 1020 - -
Vivi1345g00004 2089 SMART tha2 25 249 IPR001938 -
Vivi1345g00004 2089 SMART tha2 1092 1304 IPR001938 -
Vivi1345g00004 2089 PRINTS Pathogenesis-related protein signature 1294 1303 IPR001938 -
Vivi1345g00004 2089 PRINTS Pathogenesis-related protein signature 1186 1202 IPR001938 -
Vivi1345g00004 2089 PRINTS Pathogenesis-related protein signature 1137 1148 IPR001938 -
Vivi1345g00004 2089 PRINTS Pathogenesis-related protein signature 1091 1103 IPR001938 -
Vivi1345g00004 2089 SUPERFAMILY Osmotin, thaumatin-like protein 1091 1305 IPR037176 -
Vivi1345g00004 2089 Pfam Thaumatin family 29 249 IPR001938 -
Vivi1345g00004 2089 Pfam Thaumatin family 1096 1304 IPR001938 -
Vivi1345g00004 2089 ProSitePatterns Thaumatin family signature. 1151 1167 IPR017949 -
Vivi1345g00004 2089 SMART blect_4 261 384 IPR001480 -
Vivi1345g00004 2089 SMART blect_4 1316 1439 IPR001480 -
Vivi1345g00004 2089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1918 1930 IPR008271 GO:0004672|GO:0006468
Vivi1345g00004 2089 FunFam S-receptor-like serine/threonine-protein kinase 1769 1875 - -
Vivi1345g00004 2089 FunFam S-receptor-like serine/threonine-protein kinase 713 819 - -
Vivi1345g00004 2089 SUPERFAMILY Protein kinase-like (PK-like) 729 1013 IPR011009 -
Vivi1345g00004 2089 ProSiteProfiles Thaumatin family profile. 22 249 IPR001938 -
Vivi1345g00004 2089 ProSiteProfiles Protein kinase domain profile. 1800 2082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00004 2089 ProSiteProfiles Bulb-type lectin domain profile. 255 382 IPR001480 -
Vivi1345g00004 2089 SUPERFAMILY Protein kinase-like (PK-like) 1785 2069 IPR011009 -
Vivi1345g00004 2089 ProSiteProfiles Bulb-type lectin domain profile. 1310 1437 IPR001480 -
Vivi1345g00004 2089 SUPERFAMILY alpha-D-mannose-specific plant lectins 1353 1498 IPR036426 -
Vivi1345g00004 2089 CDD TLP-PA 1091 1285 - -
Vivi1345g00004 2089 Gene3D Transferase(Phosphotransferase) domain 1 1876 2076 - -
Vivi1345g00004 2089 Gene3D Transferase(Phosphotransferase) domain 1 820 1020 - -
Vivi1345g00004 2089 FunFam Serine/threonine-protein kinase 1440 1587 - -
Vivi1345g00004 2089 Pfam Protein kinase domain 1802 2065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00004 2089 Pfam Protein kinase domain 746 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00004 2089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672|GO:0006468
Vivi1345g00004 2089 Gene3D - 1440 1577 IPR036426 -
Vivi1345g00004 2089 SMART serkin_6 744 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00004 2089 SMART serkin_6 1800 2068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00004 2089 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1329 2080 - -
Vivi1345g00004 2089 FunFam Serine/threonine-protein kinase 385 531 - -
Vivi1345g00004 2089 SUPERFAMILY Osmotin, thaumatin-like protein 24 250 IPR037176 -
Vivi1345g00004 2089 FunFam Serine/threonine-protein kinase 1314 1438 - -
Vivi1345g00004 2089 FunFam THAUMATIN-LIKE PROTEIN 1 23 249 - -
Vivi1345g00004 2089 Gene3D - 383 510 IPR036426 -
Vivi1345g00004 2089 Gene3D Phosphorylase Kinase; domain 1 711 819 - -
Vivi1345g00004 2089 Gene3D Phosphorylase Kinase; domain 1 1765 1875 - -
Vivi1345g00004 2089 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1876 2076 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1345g00004 1732 2073 Receptor kinase-like Gene Family AT5G45780 38.000 1.34e-67 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi1345g00004 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1345g00004 - - vvo:131641348 4232.56