Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1345g00003 ATGCGAGACATGCCTCCTGCCACACTAGCAGAATTCCGTCTAGGAAACAATGGTCTTGTTTTTTATAATGTTGATGTAGTAGAAGGTTTCAATATCCCCATAGTGGTGGTTCCTATTGGTGTTTCTGGTGAGAACGTGAATTGTAGCACTGCAGGTTGCCTTACAAACATTAATAATATGTGTGCAAAAGACAATGGGACAAACACTTTTACTTGTTCAACTAATTTCTACAAGATCATATTTTGCCCAGCTTCCAGCATGGGACTTTTCGATCAAAGTGTGAGTGTAGACGACTCATTCACTGCTGGCAATGCGACAAATCGATTGCTCTCTCCTTCAGGAGAGTTTGCTTTTGGTACTTTGATTATCGTCATGTCAATTATTTTGGGATTCTCCATCGCTATAGTTATAACATTGGTTGGCGCAATTTTTTATTGGTACAACTCAAAGAAGAAAAAAAGTAGCACAACCAACAAAAAAGTTGATAGAAATTTGAGAATTTTTTCTTTCAAGGAAATTACAAAAGTAACAAACAATTTTAGGGAAGAATTAGGAAGAGGGTCTTGTAGCATTGTATACAAAGGAATTGTAGATGTGGATACTTGTGTCGCAGTTAAAAAATTGGACAAGTTATTTCAAGATAGTGATAAGGAATTTCAAACTGAAATGAATGTGATAATCAAAACTCATCATAGGAACCTTGTACGTCTTCATGGGTATTGTAGTGAAGATCAACACAGGATTTTGGTGTATGAGTTAATGAGTAATGGTACTTTAGCAAGATTTCTTTTCACACCTTTGAAACCAGACTGGAACCAACGAGTTCATATTATCATTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAAGAATGTTGCACCCAAATAATCCACTGTGACATAAAGCCACAAAACATCCTTCTTGATGATGACTACAATGCCAAGATTTCAGATTTTGGGTTAGCAAAACTATTATTGATTAATCAAAGTCACACAAAAACCGGAATCAGAGGAACCAAAGGTTATGTTGCACCAGATTGGTTTAGGAGTGCACCTATCACTTCTAAGGTTGATACTTTTAGTTTTGGAGTGTTGTTATTAGAGATTATTTGTTCTAGGAAAAATATAGAGGATGATACTGTTAGTGAAGAAAAAAGAATTTTAATTGACTGGACATATGATTGCTACAAGACTGGTAGAATGGATATTCTTTTAGAAAATGAATATGAGGCAGACAAAGATATGAGTAGATTTGAAAAATTTATCATGATTTCTATATGGTGCACTCAAGAAGATCCGTCTCTAAGGCCACCAATGAAAAAGGTGTTATTAATGCTAGAAGGGATTGTTGAAGTTGAAATTCCTCCAAATCCCTACTTGTATGGTTCTTCTAATCAAAGTTAG 1404 0.3547 MRDMPPATLAEFRLGNNGLVFYNVDVVEGFNIPIVVVPIGVSGENVNCSTAGCLTNINNMCAKDNGTNTFTCSTNFYKIIFCPASSMGLFDQSVSVDDSFTAGNATNRLLSPSGEFAFGTLIIVMSIILGFSIAIVITLVGAIFYWYNSKKKKSSTTNKKVDRNLRIFSFKEITKVTNNFREELGRGSCSIVYKGIVDVDTCVAVKKLDKLFQDSDKEFQTEMNVIIKTHHRNLVRLHGYCSEDQHRILVYELMSNGTLARFLFTPLKPDWNQRVHIIIGIARGLVYLHEECCTQIIHCDIKPQNILLDDDYNAKISDFGLAKLLLINQSHTKTGIRGTKGYVAPDWFRSAPITSKVDTFSFGVLLLEIICSRKNIEDDTVSEEKRILIDWTYDCYKTGRMDILLENEYEADKDMSRFEKFIMISIWCTQEDPSLRPPMKKVLLMLEGIVEVEIPPNPYLYGSSNQS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1345g00003 467 SMART tha2 3 83 IPR001938 -
Vivi1345g00003 467 SMART serkin_6 178 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00003 467 Gene3D Transferase(Phosphotransferase) domain 1 254 454 - -
Vivi1345g00003 467 Gene3D Phosphorylase Kinase; domain 1 142 253 - -
Vivi1345g00003 467 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 254 454 - -
Vivi1345g00003 467 SUPERFAMILY Protein kinase-like (PK-like) 162 458 IPR011009 -
Vivi1345g00003 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Vivi1345g00003 467 Pfam Protein kinase domain 181 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00003 467 ProSiteProfiles Thaumatin family profile. 1 83 IPR001938 -
Vivi1345g00003 467 Pfam Thaumatin family 4 64 IPR001938 -
Vivi1345g00003 467 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 47 457 - -
Vivi1345g00003 467 CDD STKc_IRAK 184 449 - -
Vivi1345g00003 467 ProSiteProfiles Protein kinase domain profile. 178 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1345g00003 467 SUPERFAMILY Osmotin, thaumatin-like protein 3 83 IPR037176 -
Vivi1345g00003 467 FunFam S-receptor-like serine/threonine-protein kinase 147 253 - -
Vivi1345g00003 467 Gene3D Thaumatin 2 83 IPR037176 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1345g00003 142 448 Receptor kinase-like Gene Family AT1G60800 39.875 2.14e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi1345g00003 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1345g00003 - - vvo:131641344 931.013