Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1335g00001 ATGTCAAGTTCAAGAGAAGATAATTATCAAGCAAAAGAAGAAGAAGGTAATAATAATAGTATGAATAACATTGAGAAAAGTTCTAAAGCAGCTTCAAGTAGTTCAAGACAATGGTCATCATCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGGATTAGGCTTTCGGTTCCGACCGCAATTCAATTGTATGATCTTCAAGACAAGCTTGGTTTAGGACAACCAAGCAAAGTTATAGATTGGCTACTCGAAGCAACGAAATTCGATATTGATAAACTTCCTCCACTTCAATTTCCTCAAAGCTTTTCGCAATTTCATCATCATGTTCTTCCACAAACCCTACTTCCTTTTCATGATCATCAATCAAGTAATGTTTTGTCTCATGAGCTTTCTCTTGGTCCTTTGTATGATCCTAACTCTTCTACATTTGTTGGAATTCAAAATCTCATGGCAAGATCGAAGTTTTGGGATGTCGATTCGACAAGAGAGAATAAAGGTAAAGAGGTTGAAAGAGAGTACTTTTGTGAAAAGGGTAAGTGGATCAAAACAAATGATGAAGAGAATCAAGTTGGAGAAGCTAGTTACAACAATTTTCATCAAGTTTCAACTCAAAAGCTTTTTCCTATGGAGACTCATTCTAATTTTCTTAATAATGCTATGTCATATAACAACAACTACCATTCAGAAGCTTCTACTTTGTCTTTATCTCAATTTGGAAGTGGTAATGGATTGTTCCAACCTCATCAACATCAAGTAGATCCAAATCAAAGTAATGGAAATGCATTTCAATTTCCATTTTCTTTTCAAAATTCACAACTATTGTTTGGTCCTTCTTCATCTACTACACAACCATCATCATCACTTTTGAACAATCCTTTTATGAGCCACTCAATTGAAAATGATCCAAGAGTACCACCATTCAACCATTTTCAATTCTCAAACTCAAGTTCTTCTCAACCTATGCCTCATTCTCTCATTCCATCTTTCCATCACTCATTCAATTCGCCTCCCGTAAGACCTTTTCCGATTCCATTTAGCTCGAAGCTTCTCGACTCAGATAACAATGACAATAGCAACCAGCTGGATGATAGGGATTGTCGCGATCGCTCTTGA 1179 0.3588 MSSSREDNYQAKEEEGNNNSMNNIEKSSKAASSSSRQWSSSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQSFSQFHHHVLPQTLLPFHDHQSSNVLSHELSLGPLYDPNSSTFVGIQNLMARSKFWDVDSTRENKGKEVEREYFCEKGKWIKTNDEENQVGEASYNNFHQVSTQKLFPMETHSNFLNNAMSYNNNYHSEASTLSLSQFGSGNGLFQPHQHQVDPNQSNGNAFQFPFSFQNSQLLFGPSSSTTQPSSSLLNNPFMSHSIENDPRVPPFNHFQFSNSSSSQPMPHSLIPSFHHSFNSPPVRPFPIPFSSKLLDSDNNDNSNQLDDRDCRDRS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1335g00001 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 346 IPR005333 GO:0003700
Vivi1335g00001 392 MobiDBLite consensus disorder prediction 329 345 - -
Vivi1335g00001 392 MobiDBLite consensus disorder prediction 297 345 - -
Vivi1335g00001 392 MobiDBLite consensus disorder prediction 297 319 - -
Vivi1335g00001 392 MobiDBLite consensus disorder prediction 14 44 - -
Vivi1335g00001 392 MobiDBLite consensus disorder prediction 1 44 - -
Vivi1335g00001 392 ProSiteProfiles TCP domain profile. 57 115 IPR017887 -
Vivi1335g00001 392 MobiDBLite consensus disorder prediction 366 392 - -
Vivi1335g00001 392 Pfam TCP family transcription factor 57 126 IPR017887 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1335g00001 6 253 TCP Transcription Factor Family AT5G60970 45.349 3.72e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi1335g00001 TCP 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1335g00001 - - vvo:131656990 734.176