Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1332g00004 ATGGAGTCACCTGTTGATGGAGTTGAATCTTTACCAGGAGTTCAGAATTCAGTTTCTGGAATAGATCACAATCCACCTTCGACGTCGGGGATCCTCCGTTCTTCTCGGCCGCCTTTACGAGCATCTAGAGATCAAGGGCCTTCTTCCAATCATCATAATCAAGGAAGGATGAATGATACCTATCAAGAGGCTAACAATGTGGATCGTGAAGGTTCAACTAAAATGGAGAAGCAATATTATAAGGTTAATGGTAAATCTGACGGTATCGAGAGTTTTGAAAGTTGTTTGGAAAAGAATATTTCCACAATTGAAACTAAATTGTGCGTCAGTGAAAGTTCGATGAATCGTAATTCTGATGACATATTAGAATCTGACAATGACGTATTAGTTTCGTCGAAACAAGTTGTTGATCAGGGAAACTCCGAGATTACGTTTTGCTCAAGTCCTCAGAATAGTTTATATTCTGCCACTGTCTATTCAGAAGCTAAAGAAAGTTTCACCAACACCGGAATCAACGAATGTGTTAGTGTCGATAAGTCAGTTGAAAGTGGCGAGGTTAGTAATTCATGTGAGAGCAGGAAGACGAGCATATGTAGAGGGAGTACCGGGAGTGATGTTAGTGACGAGAGCAGCATCAGTAGTTTGAGCAGTTCTTTGTATAAACCACATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCGATCCGAGTTCGGGATGGTGGATTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAGTTAAGCAGCACGAGGACTTGTTTTGCTATGAAAGTAATGAACAAGACAGAATTGTCGAGTCGCAAGAAGCTTCCGAGAGCGCAGACAGAGAGGGAGATCTTGCAGTCTCTAGATCATCCATTTCTACCGTCGTTGTACACGCACTTTGAGACAGAATCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGCGGGGATCTCCATGCACTCAGGCAAAGACAGCCTGGGAAGTATTTTTCAGAGCATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTAGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATCATGCTATCAGATTTCGATCTCTCTCTAAGATGTGCCGTCAGTCCAACTCTGGTAAAGTCATCAAACACCAGCTTGGAGACTAAAAGCTCTGGATACTGCATTCAGCCCGCTTGCATCGAACCAACCTGTGTAATTCAGCCAGATTGCATCAAACCGTCATGCTTCACGCCACGTTTTCTCTCAGGCAAATCCAAGAAGAAAGAAAAGAAGTTGAAACCTAAGAATGATGTGCACAATCAGGTGACACCACTCCCCGAGCTTATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTCGTTGGCACACACGAATACTTGGCGCCCGAAATCATCAAAGGCGAAGGTCACGGCAGTGCTGTAGACTGGTGGACATTTGGTATATTCTTATACGAGCTTTTGTTCGGTAGAACCCCATTCAAAGGTTCAGCAAATCGAGCAACTTTATTTAATGTAGTTGGGCAGCCCTTAAGATTTCCTGAATCCCCTAGTGTTAGCTTTGCTGCTAGGGACTTGATTAGGGGTCTACTTGTGAAAGAGCCTCAGCATCGTCTTGCGTATAGACGTGGCGCTACAGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCAACTCCTCCAGAAGTGCCGAGACAGGCCATGAAAGAAGCACTTATAGCTGAGAAGAAGGCGCCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA 1899 0.4376 MESPVDGVESLPGVQNSVSGIDHNPPSTSGILRSSRPPLRASRDQGPSSNHHNQGRMNDTYQEANNVDREGSTKMEKQYYKVNGKSDGIESFESCLEKNISTIETKLCVSESSMNRNSDDILESDNDVLVSSKQVVDQGNSEITFCSSPQNSLYSATVYSEAKESFTNTGINECVSVDKSVESGEVSNSCESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTRTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLETKSSGYCIQPACIEPTCVIQPDCIKPSCFTPRFLSGKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKEALIAEKKAPGVKPSGNYLDIDFF 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1332g00004 632 SMART serkin_6 248 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00004 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vivi1332g00004 632 ProSiteProfiles Protein kinase domain profile. 248 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00004 632 FunFam serine/threonine-protein kinase D6PK-like 332 399 - -
Vivi1332g00004 632 CDD STKc_phototropin_like 246 606 - -
Vivi1332g00004 632 PANTHER FLIPPASE KINASE 1-RELATED 78 608 - -
Vivi1332g00004 632 Gene3D Transferase(Phosphotransferase) domain 1 332 400 - -
Vivi1332g00004 632 FunFam Serine/threonine-protein kinase D6PK-like 246 331 - -
Vivi1332g00004 632 Gene3D Transferase(Phosphotransferase) domain 1 480 604 - -
Vivi1332g00004 632 Gene3D Phosphorylase Kinase; domain 1 246 331 - -
Vivi1332g00004 632 MobiDBLite consensus disorder prediction 1 76 - -
Vivi1332g00004 632 MobiDBLite consensus disorder prediction 10 68 - -
Vivi1332g00004 632 FunFam serine/threonine-protein kinase D6PK-like 481 604 - -
Vivi1332g00004 632 SUPERFAMILY Protein kinase-like (PK-like) 222 605 IPR011009 -
Vivi1332g00004 632 Pfam Protein kinase domain 249 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00004 632 Pfam Protein kinase domain 483 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1332g00004 191 632 AGC Kinase Gene Family AT5G47750 75.711 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi1332g00004 Pkinase 3.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1332g00004 K08286 - gmx:100802402 979.933