Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1332g00003 ATGAATGATACCTATCAAGAGGCTAACAATGTGGATCGTGAAGGTTCAACTAAAATGGAGAAGCAATATTATAAGGTTAATGGTAAATCTGACGGTATCGAGAGTTTTGAAAGTTGTTTGGAAAAGAATATTTCCACAATTGAAACTAAATTGTGCGTCAGTGAAAGTTCGATGAATCGTAATTCTGATGACATATTAGAATCTGACAATGACGTATTAGTTTCGTCGAAACAAGTTGTTGATCAGGGAAACTCCGAGATTACGTTTTGCTCAAGTCCTCAGAATAGTTTATATTCTGCCACTGTCTATTCAGAAGCTAAAGAAAGTTTCACCAACACCGGAATCAACGAATGTGTTAGTGTCGATAAGTCAGTTGAAAGTGGCGAGGTTAGTAATTCATGTGAGAGCAGGAAGACGAGCATATGTAGAGGGAGTACCGGGAGTGATGTTAGTGACGAGAGCAGCATCAGTAGTTTGAGCAGTTCTTTGTATAAACCACATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCGATCCGAGTTCGGGATGGTGGATTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAGTTAAGCAGCACGAGGACTTGTTTTGCTATGAAAGTAATGAACAAGACAGAATTGTCGAGTCGCAAGAAGCTTCCGAGAGCGCAGACAGAGAGGGAGATCTTGCAGTCTCTAGATCATCCATTTCTACCGTCGTTGTACACGCACTTTGAGACAGAATCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGCGGGGATCTCCATGCACTCAGGCAAAGACAGCCTGGGAAGTATTTTTCAGAGCATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTAGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATCATGCTATCAGATTTCGATCTCTCTCTAAGATGTGCCGTCAGTCCAACTCTGGTAAAGTCATCAAACACCAGCTTGGAGACTAAAAGCTCTGGATACTGCATTCAGCCCGCTTGCATCGAACCAACCTGTGTAATTCAGCCAGATTGCATCAAACCGTCATGCTTCACGCCACGTTTTCTCTCAGGCAAATCCAAGAAGAAAGAAAAGAAGTTGAAACCTAAGAATGATGTGCACAATCAGGTGACACCACTCCCCGAGCTTATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTCGTTGGCACACACGAATACTTGGCGCCCGAAATCATCAAAGGCGAAGGTCACGGCAGTGCTGTAGACTGGTGGACATTTGGTATATTCTTATACGAGCTTTTGTTCGGTAGAACCCCATTCAAAGGTTCAGCAAATCGAGCAACTTTATTTAATGTAGTTGGGCAGCCCTTAAGATTTCCTGAATCCCCTAGTGTTAGCTTTGCTGCTAGGGACTTGATTAGGGGTCTACTTGTGAAAGAGCCTCAGCATCGTCTTGCGTATAGACGTGGCGCTACAGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCAACTCCTCCAGAAGTGCCGAGACAGGCCATGAAAGAAGCACTTATAGCTGAGAAGAAGGCGCCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA 1731 0.4344 MNDTYQEANNVDREGSTKMEKQYYKVNGKSDGIESFESCLEKNISTIETKLCVSESSMNRNSDDILESDNDVLVSSKQVVDQGNSEITFCSSPQNSLYSATVYSEAKESFTNTGINECVSVDKSVESGEVSNSCESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTRTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLETKSSGYCIQPACIEPTCVIQPDCIKPSCFTPRFLSGKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKEALIAEKKAPGVKPSGNYLDIDFF 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1332g00003 576 Gene3D Phosphorylase Kinase; domain 1 185 277 - -
Vivi1332g00003 576 SUPERFAMILY Protein kinase-like (PK-like) 166 549 IPR011009 -
Vivi1332g00003 576 FunFam serine/threonine-protein kinase D6PK-like 425 548 - -
Vivi1332g00003 576 SMART serkin_6 192 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00003 576 FunFam serine/threonine-protein kinase D6PK-like 276 343 - -
Vivi1332g00003 576 FunFam Serine/threonine-protein kinase D6PK-like 190 275 - -
Vivi1332g00003 576 Pfam Protein kinase domain 427 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00003 576 Pfam Protein kinase domain 193 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00003 576 Gene3D Transferase(Phosphotransferase) domain 1 278 547 - -
Vivi1332g00003 576 ProSiteProfiles Protein kinase domain profile. 192 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1332g00003 576 CDD STKc_phototropin_like 190 550 - -
Vivi1332g00003 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Vivi1332g00003 576 PANTHER FLIPPASE KINASE 1-RELATED 57 552 - -
Vivi1332g00003 576 Coils Coil 576 576 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1332g00003 135 576 AGC Kinase Gene Family AT5G47750 75.711 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi1332g00003 Pkinase 3.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1332g00003 K08286 - gmx:100802402 928.702