Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1326g00013 ATGGCTTCTTCTGATGCTGAGTACCGGTGCTTCGTCGGTGGCCTTGCCTGGACCACCGATAGCGATGGCCTCAACAAAGCGTTCTCTACTTTCGGTGAAATCACTGATTCCAAGGTTATTATGGATCGTGAGACTGGAAGGTCGAGAGGTTTTGGATTTGTGACGTTTGCTGCGGAGCAATCTATGAGAGATGCGATTGAAGGGATGAACGGTCAAGATGTTGATGGTCGTAATATTACTGTGAATGAAGCTCAGTCACGTGGTAGAGGTGGAGGAGGCGGTGGTGGATACGGTGGAGGAGGAGGCGGTGGTTATGGTGGTGGAGGTGGATACAACAGAAACGGTGGGGGTGGTGGAGGCTATGGCGGTGGAGGAGGTGGTTATGGTGGTGGCGGAAGTGGTGGATATGGTGGTGGAAGAGATCGTGGTTATGGTGGTGGTGGTGGTGATAGATATGGTGGTGGAGGTGGTGGTGGTGATAGATATGGCGGTGGAGGCGGTGGTGGGGGTAGATATGGCGGTGGAGGTGGTGGTGATAGAGGGTATGGTGGTGGCGGCGGTGGTGGCTACTCTCGTGGTGGCGACGGGGGCAGTGGTGGAAACTGGAGGGACTAG 615 0.5512 MASSDAEYRCFVGGLAWTTDSDGLNKAFSTFGEITDSKVIMDRETGRSRGFGFVTFAAEQSMRDAIEGMNGQDVDGRNITVNEAQSRGRGGGGGGGYGGGGGGGYGGGGGYNRNGGGGGGYGGGGGGYGGGGSGGYGGGRDRGYGGGGGDRYGGGGGGGDRYGGGGGGGGRYGGGGGGDRGYGGGGGGGYSRGGDGGSGGNWRD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1326g00013 204 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 4 188 - -
Vivi1326g00013 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vivi1326g00013 204 FunFam Glycine-rich RNA-binding protein GRP1A 2 114 - -
Vivi1326g00013 204 Gene3D - 2 105 IPR012677 -
Vivi1326g00013 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vivi1326g00013 204 MobiDBLite consensus disorder prediction 150 204 - -
Vivi1326g00013 204 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vivi1326g00013 204 CDD RRM2_NsCP33_like 9 84 - -
Vivi1326g00013 204 SUPERFAMILY RNA-binding domain, RBD 7 118 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1326g00013 10 81 Eukaryotic Initiation Factors Gene Family AT1G22760 40.278 3.19e-10 57.0