Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1326g00012 ATGGCTTCCTCAGATGTTGAGTACCGGTGCTTTGTTGGTGGTCTAGCATGGGCCACTGACAACGATGCCCTAGAGAAAGCCTTCTCTCAATACGGTGAAATCGTCGACTCGAAGATTATTAACGATCGTGAGACTGGACGGTCAAGAGGTTTTGGATTTGTGACTTTTGCCAACGAGGAATCCATGAGAAACGCGATCGAAGGTATGAACGGTCAGGACATGGACGGACGTAACATCACCGTAAACGAAGCTCAGAGCCGTGGTAGTGGCGGAGGAGGCCGTGGTGGCGGTGGATATGGAGGTGGACGCGGTGGCGGAGGATACGGTGGAGGTGGAGGATATGGTGGCCGTCGTGAAGGCGGAGGAGGAGGATACGGAAGCGGAGGAGGAGGATATGGTGGTGGTGGTTATGGTGGAAGCAGGGATCGTGGATATGGAGGAAGTGGCGGTGGAGGTGGTTATTCTCGCGGTGGAGGTGGTGGTGGTGGAAACTGGAGGGAGTAG 504 0.5516 MASSDVEYRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEESMRNAIEGMNGQDMDGRNITVNEAQSRGSGGGGRGGGGYGGGRGGGGYGGGGGYGGRREGGGGGYGSGGGGYGGGGYGGSRDRGYGGSGGGGGYSRGGGGGGGNWRE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1326g00012 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vivi1326g00012 167 FunFam Glycine-rich RNA-binding protein GRP1A 2 117 - -
Vivi1326g00012 167 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vivi1326g00012 167 CDD RRM2_NsCP33_like 9 84 - -
Vivi1326g00012 167 MobiDBLite consensus disorder prediction 82 102 - -
Vivi1326g00012 167 Gene3D - 2 108 IPR012677 -
Vivi1326g00012 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vivi1326g00012 167 PANTHER GEO13361P1-RELATED 3 160 - -
Vivi1326g00012 167 MobiDBLite consensus disorder prediction 119 167 - -
Vivi1326g00012 167 SUPERFAMILY RNA-binding domain, RBD 8 115 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1326g00012 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 37.975 6.93e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1326g00012 - K13195 ccaj:109800681 157.147