Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1326g00002 ATGTCGGATTCTACTACTCCTCTCATGAGTTTGAAGGTGCTCATTTTAGCAGGAATTTTCCTCATCATCGTAATAATCATCGTGCTTCTGATATTCCTCTGCTTTCGCGGGAACCGAAGCTGCAAGAAACGGAGGATGTTACCGAAGCTACACAGCTCCGGCACCACTCCTCTGGTTTCGAAGGAGATCGCGGTGGTTAGGGAGATTGATCTCACGCGCTCCAATGAAAAACAGACGCGGATTGAGATTATTGAAGATGGTGATGGTTTGAAGAAGGAAGCGGAGATGAAGGTTGAAATTGGAGTTGTTAGGAAAAGTGACGTGTCGTGTGGGACCTACATGCAGGAGGATCCAAACATAGGGTGGGGTCGGTGGTATAGTTTGAAGGAAGTGGAAAATGCGACACGTGGATTTGCGGAAGGGAATGTGATTGGTGAAGGAGGGTATGGAGTTGTTTATAGAGGTGTTTTGGAGGATGGTTCTGTTGTTGCTGTCAAGAATCTTCACAACAACAAGGGTGAAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCCATTGGCAAAGTAAGGCATAAGAATTTAGTTCGTTTAGTAGGATATTCTGCAGAAGGTGCTAGAAGGATGCTTGTTTATGAATATGTTGAGAATGGAAATTTGGAGCATTGGCTGCATGGTAATGTAGGACCAGTTAGTCCCTTGACATGGGAGATTCGAATCAAGATTGCAATTGGGACTGCGAAAGGGCTAAGCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACAGAGATATAAAATCCAGTAATATCCTCTTGGACAAAAATTGGAATGCGAAAGTTTCAGATTTTGGACTTGCCAAGCTCTTAGGATCTGAGAAAACTCATGTAACAACGCGTGTGATGGGGACATTTGGATATGTTTCGCCTGAGTATGCAAGCACGGGTATGCTTAATGAGCGTAGCGATGTTTATAGTTTTGGAGTTCTACTCATGGAAATAATCACAGGAAGAAGCCCTATTGATTATTCAAAACCCCCCGGAGAGATGAATTTGGTTGATTGGTTTAAGGCAATGGTAGCAAGTCGTCGCAGCGATGAACTAGTTGATCCTCTGATTGAGATTCCACCTTCTCCGAGATCTCTGAAGCGAATTTTACTGATCTGTCTACGCTGTATAGACTTGGATGTCATCAAGCGACCGAAGATGGGTCAAATTGTTCATATGCTTGAGTCAGACGATTTCCCCTTTCGTTCTGAGCTACGTACAATTAGGGACAAAGACTCTGTGCCTTCTCAAGCAGATGTTTCCATCAAAGTTCCATATCCTCGAAAGCATATAGAACCTGCGGAAAAATCAATGCCTAGATGA 1368 0.4371 MSDSTTPLMSLKVLILAGIFLIIVIIIVLLIFLCFRGNRSCKKRRMLPKLHSSGTTPLVSKEIAVVREIDLTRSNEKQTRIEIIEDGDGLKKEAEMKVEIGVVRKSDVSCGTYMQEDPNIGWGRWYSLKEVENATRGFAEGNVIGEGGYGVVYRGVLEDGSVVAVKNLHNNKGEAEKEFKVEVEAIGKVRHKNLVRLVGYSAEGARRMLVYEYVENGNLEHWLHGNVGPVSPLTWEIRIKIAIGTAKGLSYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSKPPGEMNLVDWFKAMVASRRSDELVDPLIEIPPSPRSLKRILLICLRCIDLDVIKRPKMGQIVHMLESDDFPFRSELRTIRDKDSVPSQADVSIKVPYPRKHIEPAEKSMPR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1326g00002 455 PANTHER OS01G0323000 PROTEIN 4 428 - -
Vivi1326g00002 455 FunFam Probable serine/threonine-protein kinase At1g01540 118 213 - -
Vivi1326g00002 455 ProSiteProfiles Protein kinase domain profile. 138 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1326g00002 455 Gene3D Phosphorylase Kinase; domain 1 111 213 - -
Vivi1326g00002 455 SUPERFAMILY Protein kinase-like (PK-like) 119 410 IPR011009 -
Vivi1326g00002 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vivi1326g00002 455 ProSitePatterns Protein kinases ATP-binding region signature. 144 166 IPR017441 GO:0005524
Vivi1326g00002 455 SMART serkin_6 138 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1326g00002 455 FunFam Putative receptor-like serine/threonine-protein kinase 214 424 - -
Vivi1326g00002 455 Pfam Protein kinase domain 140 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1326g00002 455 Gene3D Transferase(Phosphotransferase) domain 1 214 423 - -
Vivi1326g00002 455 CDD STKc_IRAK 144 410 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1326g00002 89 410 Receptor kinase-like Gene Family AT4G02010 44.172 4.93e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi1326g00002 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1326g00002 - - tpra:123913149 714.146