Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1324g00011 ATGTCGTTGATGAAGGTTTTTCGATCTGGCAAATTCTCGAGATCCTTTAAGGAAGTTCCGTCATCTCTCGATGCTACCGGTGATGACCGGAATGGAACCGCCGTCTGTGAACCGGAGGACGGAACTGATTGGTCTACCATGCTGCCGGATCTACTTGCGGAGATTATTAAACGAGTTGACGCCGCTGAGGAACAGTGGCCGCGCCGTCAAGACGTCGTCGCTTGCGCCTGCGTTTGTAAACGGTGGAGAGATGTTACGCGGGAGACCGTAATGTCACCGCGTGACGGAAGAATCACTTTTCCGTCTTGTCTTAAACAGCCAGGACCACGAGACCTACCTCATCAATGTCTAATTAAGCGGGATAAGAAGACTTCCACATTTTACCTCTATCTTTCCCTTACATCATCATTCACAGACAAAGGGAAGTTTCTATTAGCAGCTAAAAGATATAGGTGTGGTACCCATATTGAGTATGTTATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCGTCCACCCCATAATGGTGCCAAACCATCATGTGCCAAATCTAGCCGTCGTTTTGCAAGCAAACAGATAAGCCCTCATGTTCCTCATGTCCCTGCTGGAAACTTTGAGGTGGGGAACGTCTCTTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGAAGAATGACTTGCTCTCTTAATTCTACTGCCTCATCAATCGGTGAAAGCTCAGATGGCAAGTCGTTCGATGGCCACAAGACGCACCCTACCTCTCTCAAATCTACTGTCTCACCAATGGGTGAAAGCTCAGATGGCAAGTCTTGTGATGGCCACAAGATGGACCCTTGCTCTCTCAAGTCTACTGTCTCATCAACGGCTAAAAGCTTAGATGCCAAGTCTTTCGCTGACCACATGATGCCCCGCAAAAAACCTTCTGCACACACAATCTTGAAAAACAAAGCTCCAAGGTGGCACGAACATTTGCAATGCTGGTGCTTGAACTTCCACGGTCGGGTAACAGTGGCATCAGTGAAGAACTTTCAGCTGATTGCCACTGTTGACCAGAGCCAACCCGAAGGAAAAGGTGATCAAGAAACTGTTCTACTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGACTATAGACAGCCCTTATCCGCCTTCCAGGCATTTGCGATATGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1278 0.471 MSLMKVFRSGKFSRSFKEVPSSLDATGDDRNGTAVCEPEDGTDWSTMLPDLLAEIIKRVDAAEEQWPRRQDVVACACVCKRWRDVTRETVMSPRDGRITFPSCLKQPGPRDLPHQCLIKRDKKTSTFYLYLSLTSSFTDKGKFLLAAKRYRCGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSCAKSSRRFASKQISPHVPHVPAGNFEVGNVSYKFNLLKSRGPRRMTCSLNSTASSIGESSDGKSFDGHKTHPTSLKSTVSPMGESSDGKSCDGHKMDPCSLKSTVSSTAKSLDAKSFADHMMPRKKPSAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATVDQSQPEGKGDQETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1324g00011 425 MobiDBLite consensus disorder prediction 250 296 - -
Vivi1324g00011 425 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Vivi1324g00011 425 MobiDBLite consensus disorder prediction 273 287 - -
Vivi1324g00011 425 Pfam Tub family 104 420 IPR000007 -
Vivi1324g00011 425 SUPERFAMILY Tubby C-terminal domain-like 96 425 IPR025659 -
Vivi1324g00011 425 Gene3D Tubby Protein; Chain A 99 292 IPR025659 -
Vivi1324g00011 425 Gene3D Tubby Protein; Chain A 293 425 IPR025659 -
Vivi1324g00011 425 Pfam F-box domain 49 87 IPR001810 GO:0005515
Vivi1324g00011 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Vivi1324g00011 425 SUPERFAMILY F-box domain 40 88 IPR036047 GO:0005515
Vivi1324g00011 425 Gene3D - 37 91 - -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Vivi1324g00011 425 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Vivi1324g00011 425 MobiDBLite consensus disorder prediction 20 39 - -
Vivi1324g00011 425 PANTHER TUBBY-RELATED 36 423 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1324g00011 42 425 TUB Transcription Factor Family AT1G53320 67.013 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi1324g00011 Tub 2.5e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1324g00011 K19600 - gmx:100801919 565.844