LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1324g00010	ATGTCGTTGATGAAGGTTTTTCGATCTGGCAAATTCTCGAGATCCTTTAAGGAAGTTCCGTCATCTCTCGATGCTACCGGTGATGACCGGAATGGAACCGCCGTCTGTGAACCGGAGGACGGAACTGATTGGTCTACCATGCTGCCGGATCTACTTGCGGAGATTATTAAACGAGTTGACGCCGCTGAGGAACAGTGGCCGCGCCGTCAAGACGTCGTCGCTTGCGCCTGCGTTTGTAAACGGTGGAGAGATGTTACGCGGGAGACCGTAATGTCACCGCGTGACGGAAGAATCACTTTTCCGTCTTGTCTTAAACAGCCAGGACCACGAGACCTACCTCATCAATGTCTAATTAAGCGGGATAAGAAGACTTCCACATTTTACCTCTATCTTTCCCTTACATCATCATTCACAGACAAAGGGAAGTTTCTATTAGCAGCTAAAAGATATAGGTGTGGTACCCATATTGAGTATGTTATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGCAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCGTCCACCCCATAATGGTGCCAAACCATCATGTGCCAAATCTAGCCGTCGTTTTGCAAGCAAACAGATAAGCCCTCATGTTCCTCATGTCCCTGCTGGAAACTTTGAGGTGGGGAACGTCTCTTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGAAGAATGACTTGCTCTCTTAATTCTACTGCCTCATCAATCGGTGAAAGCTCAGATGGCAAGTCGTTCGATGGCCACAAGACGCACCCTACCTCTCTCAAATCTACTGTCTCACCAATGGGTGAAAGCTCAGATGGCAAGTCTTGTGATGGCCACAAGATGGACCCTTGCTCTCTCAAGTCTACTGTCTCATCAACGGCTAAAAGCTTAGATGCCAAGTCTTTCGCTGACCACATGATGCCCCGCAAAAAACCTTCTGCACACACAATCTTGAAAAACAAAGCTCCAAGGTGGCACGAACATTTGCAATGCTGGTGCTTGAACTTCCACGGTCGGGTAACAGTGGCATCAGTGAAGAACTTTCAGCTGATTGCCACTGTTGACCAGAGCCAACCCGAAGGAAAAGGTGATCAAGAAACTGTTCTACTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGACTATAGACAGCCCTTATCCGCCTTCCAGGCATTTGCGATATGCTTAACTAGCTTTGGCACTAAACTGGCTTGA	1272	0.4717	MSLMKVFRSGKFSRSFKEVPSSLDATGDDRNGTAVCEPEDGTDWSTMLPDLLAEIIKRVDAAEEQWPRRQDVVACACVCKRWRDVTRETVMSPRDGRITFPSCLKQPGPRDLPHQCLIKRDKKTSTFYLYLSLTSSFTDKGKFLLAAKRYRCGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNGAKPSCAKSSRRFASKQISPHVPHVPAGNFEVGNVSYKFNLLKSRGPRRMTCSLNSTASSIGESSDGKSFDGHKTHPTSLKSTVSPMGESSDGKSCDGHKMDPCSLKSTVSSTAKSLDAKSFADHMMPRKKPSAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATVDQSQPEGKGDQETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLA	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1324g00010	423	Gene3D	-	37	91	-	-
	Vivi1324g00010	423	SUPERFAMILY	F-box domain	40	88	IPR036047	GO:0005515
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	335	352	IPR000007	-
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	158	174	IPR000007	-
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	382	401	IPR000007	-
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	403	423	IPR000007	-
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	353	369	IPR000007	-
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	174	198	IPR000007	-
	Vivi1324g00010	423	PRINTS	Tubby superfamily signature	226	253	IPR000007	-
	Vivi1324g00010	423	SUPERFAMILY	Tubby C-terminal domain-like	96	423	IPR025659	-
	Vivi1324g00010	423	Pfam	Tub family	104	420	IPR000007	-
	Vivi1324g00010	423	Pfam	F-box domain	49	87	IPR001810	GO:0005515
	Vivi1324g00010	423	MobiDBLite	consensus disorder prediction	250	296	-	-
	Vivi1324g00010	423	ProSitePatterns	Tub family signature 1.	353	366	IPR018066	-
	Vivi1324g00010	423	MobiDBLite	consensus disorder prediction	20	39	-	-
	Vivi1324g00010	423	PANTHER	TUBBY-RELATED	36	423	-	-
	Vivi1324g00010	423	Gene3D	Tubby Protein; Chain A	101	419	IPR025659	-
	Vivi1324g00010	423	MobiDBLite	consensus disorder prediction	273	287	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1324g00010	42	423	TUB Transcription Factor Family	AT1G53320	66.841	1.82e-179	503

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Vivi1324g00010		Tub	2.5e-100	CL0395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1324g00010	K19600		-	gmx:100801919	560.451