Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1324g00008 ATGATGAAGAGGAACAATATGAACACAAACTTGAAAGGCTATCATCAAACTTATTATAATAGTCCTATTATCACCAACAAGAGTCCTTCATCGTCGTCGGAGGATTATATGATGAATGGTTTTCATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAGGAATTCAAATCGGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCAAGGCTTAGACAATCATCACCACCAACAACTCATCATGAACTTCAAACTCAAACTCAAACTCAAGGTTCTTCTATGCTTAACCTTAATAATAACCCTACTAACCCTAATAACTTTTTCTCAAACTCGTCATTGTTGCAACCATGTTCTTCATCTTCTTCTTCCTCTTTGGCAACAACTCTTAAGCCTATTACTTGCACATTACCTTTGTTTGTTGTGGATGGCATTTTGTTGAACCCTAGTTTGAGCGCGATGACGTCGGAGAAATCGAAGATGGAAGAATGTGATGTTTTTGCATGTGAAGATAATCATGAGTGTAGAATGTTGAAGAAAGGTGAGAATATTATAAGGATGGATTTGGAGATTGGTTTGCCTGGTGATTATGATAACTTGGATCTCGAGCTTCGTTTGGGGACTACTGCTTATTCTAATTAG 660 0.3788 MMKRNNMNTNLKGYHQTYYNSPIITNKSPSSSSEDYMMNGFHPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTTHHELQTQTQTQGSSMLNLNNNPTNPNNFFSNSSLLQPCSSSSSSSLATTLKPITCTLPLFVVDGILLNPSLSAMTSEKSKMEECDVFACEDNHECRMLKKGENIIRMDLEIGLPGDYDNLDLELRLGTTAYSN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1324g00008 219 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Vivi1324g00008 219 PANTHER OS07G0101800 PROTEIN 38 214 - -
Vivi1324g00008 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Vivi1324g00008 219 Gene3D Classic Zinc Finger 45 109 - -
Vivi1324g00008 219 SMART c2h2final6 49 71 IPR013087 -
Vivi1324g00008 219 MobiDBLite consensus disorder prediction 83 106 - -
Vivi1324g00008 219 MobiDBLite consensus disorder prediction 80 106 - -
Vivi1324g00008 219 Pfam C2H2-type zinc finger 49 73 - -
Vivi1324g00008 219 SUPERFAMILY beta-beta-alpha zinc fingers 46 76 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1324g00008 35 213 C2H2 Transcription Factor Family AT3G23130 39.891 1.67e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1324g00008 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1324g00008 - - gmx:100793786 162.155