Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1323g00002 ATGGATGCAAGCTCGACCTCACAAAAATCTGGTCATTCAACTTTGAAAAAATGTCTGTTGCAACCGTTTCATGCCATGTGTGGTCGTAAGTCAAATTCCAATTCGCACATCTCAAATCAGGATGCATCTGCTGCTACTTCATCTGACTTGATCATCTTGAGCCAAGGTGCATCTCCTTCTAGTTCATCTGATTCGAACATCTTGACTCACGCTACAACTACTACCAGTTCATTTGATTTCAACATCATGAATCAAGGTGCAAGTGCAACTACTGCTACCTCATCTGATTTCAACATCTTGAATAATGGCGCAACTGCTGTTACCTCATCTGATTTCAACCTCTTGAACAACGGTGAAGCCTCTAGTTCATCTTTGGTTTCTGATAACATTCAAAACAACAGATACGACGTGTTTATCAGTTTCAGAGGCTCCGACACGCGCAACACCTTTGTCGACCATCTCTACGCTCATCTCACTGGAAAAGGTATTTTTACTTTCAAAGATGACACGCAGCTTCACAAAGGTGGATCCATTTCAACCCAACTTCGACACGCAATAAAAAACTCGCGTGTTTCTGTAGTTGTTTTCTCTGAAGATTATCCCACCTCAACCTGGTGTTTGGATGAAATGAGTACCATTGTTAATTGTTGTAGAAACGCAAAGCAAATTGCTTTACCGGTTTTCTATGACGTTGATCCGTCTCATGTTCGACGACAAAATGGAGTCTATGAGTTTGCCTTTGATTTACACTTCAAATCTAATCCACATAAGGTTGTTGAATGGAAGAGAGATATGACATATTTGGCTGAAATCGCCGGTTACGATATCAGGAACAAGCCGGAATTTCAAGAGATTAAAAATATTGTTCAGTCAATAACAAAGAAGTTGGATCATAGATTCTTACCGAGTCTCGATGACCTTATAGGAATGCAACCTCATATAGAAGAATTAGAGAGTCTTTTGAAACTAAGGTCAGAATCAGATGATGATCATGGTGGTTGTCAAGTTTTAGGACTATGGGGTATGGATGGAATTGGAAAGACAACTCTTGCGAAAGTTTTGTATGATAGAATCTCATATCAATTTGATGCTTCTTGTTTCATTGAAAACGTTAGCAAAAGTTATGAAGATGGTGGTGCTATTGCTGTGCAGAAACAAATAATTCATCAAACTGTAAAAGAGTTTGTTTTAGAAGGATACAGTCCTTCTCAAATATCCGGAGTTATAACAAGGCTGTACAACATGAAGGTCCTTATAGTTCTTGACGACGTTGATCAACTGCTTGAGTTGAATGTAAATGTTAAGATGCTTCGTCCGGGGAGTAGAATAATCATAACCACAAGAGACGTGCATATTCTTGAACTATATGAAGCGGATATAATTCACGAGATTGGATTGATGAACGACAATGATGCTCGGGAGCTTCTATGTAGAAAAGCCTTCAAAAGTGATCATTCTAGTAGTGATTATGCCGAACTTATTCCTATGATACTAAAATATGCTCAAGGTCTTCCTTTAGCAATTAGAGTGATGGGTTCATTTTTGTACAAGAGAAATACTACCCAATGGAGAGCTACTTTGGAAGGATTGGAGAATAATCCAGATAGTGGAATCATGAAAGTTCTTCAATCAAGTTTCGAGGGACTCGAGCTAAGAGAGAAAGAGATATTCTTGCACATTGCTTGCTTCTTTGATGGGGAGAGGGAGGATTATGTAAAGAGAATTCTACATGCTTGTGGATTGCAGCCTGATATTGGAATTCCAGTTATTGCTGAAAAATCGTTCATAACCATTAGAAACCAGGAAATTCATATGCATAAAATGTTACAAGTGTTGGGGAAGAAAATTGTTCGAGAACAACATCCTGATCAACCAAGCTTATGGAGTAGATTGTGGCTTTACAGTGATTTCTATGATGCCATGACTACACAACCGGTAGCAATTAAAGCTGAAGCCATAATTATAAATCAAAAGGAGGAAGAAGTCTCCAAATTCAATGAGTTGCGCGGTGCATATTTATCAAAAATGGGAAGTTTGAAAGTGTTAATATTATATCACTCGACTTTTTCAGAAAGACCCATATCTCTTTCTAATTCCCTACGCTATATTTTGTGGAATGGTTACGCTTTCAATTCTTTGCCAAATTTTAATCCATATAAGCTTGTAGAATTCAATATGCCTGATAGCAGCATTCAACAACTATGGACACAAACTTTGAATCTTCCGTATTTGAAAAGGATGGATTTGAGCAAATCCAAAAATCTCATGACAACTCCATGCTTTGAAGGTATGAAAAATCTTGAGCGGCTTGATCTTACCGGATGCATAAATCTATTGATGGTGCATCCCTCGATAGGAGTTCTTACAAAACTTGTATTCTTAAGTTTGCAACAGTGTATCAATCTAGAGAGTCTTGATTTCAGCAATGCACCAAGATTGACTTCTCTGAGAGTTCTTCGTCTCTCCGATTGTACAAAACTTAAACACACTCCAGATTTCAGTGAAATGTTACTCCTTCAGTATCTTGATATGGATCGATGTGCAAGTTTATTCACCATTCATAAATCTATCGGAGCTCTTGAAAACCTTAAATTCTTAAGTTTGAGAGAGTGCAAAAATCTATTTAGATTACCGGACAACTTTTATATAATGAGATCTCTTACAACCCTAGATCTTTATGGGTGTTCTAAATTTACTAGACTTCCCCTAGGAGAAATTACTACTTCTCCTCTCCAATCTTTGGTTTATCTAGACTTAAGTTTTTGCAATATTACTATAATGCCTGATGTTATTGGAGAATTAAGGTGTTTAGAAAGACTAAATCTTCAAGGAAATAAGTTTACTACACTTCATTCCACATTGAGTTGTCTTCACAATCTATCATATTTAAACCTATCTCATTGCCATAGGCTTCAAAGTTTACCTGAGCTACCGATAGAGAGTGGTCGATCAGATTTGGCGGGAAAATATTTTAAAACAACATCTGAATCTCGTAATCATAGATCGGGTCTATATATTTTTGACTCTCCCAATTGTTACATAGGCGAGTCCTTGATCGCAAACCAACATATATATTGGCTCTTCACTACATGGATAATAAGACTCGTTAAGGAACCTCTTCATTATCGGTGTGGCTTTGACATCATTTTTCCTTGGCATGTGGAAACCAATGGTTTGTATAAAGATAGTGTTTTCTCAGATTTGTTGTTCCACTTCCATCATCAGTTTAACGGGAATACAGTAGTACGAATGGATTGTTCAACTATGGCGGTTGATTGGGCTGGTTTTCTCTTTTATGTAACATTTGAGTCAAATAACCATAATCATCAATCGTTATCTTCTTCTTCATCGTCATTGCCATGTCCTTTTTATCTTTCTTTTGAGAGTGAGCACACTGAAGAACGATTTGATATGCGAATAAATTTGGAACATAATCAGGTTCAAGGCAGGAATTATATTTGGATGATCTTTATCTCTAGAGAACACTGCCATTTTGTAGAAACTGGAGCACAAATCACATTTAAAGCATGCAAAGGTTTGGTTATTAAGGAATGGGGGTTATGTGTCATAACCAAGGAAGATGTAGAGGGCTCGGAATGGAGACCAAGAACTGATCTTGATTTACAGGTTCTGGAAATAAAAGAAAGCAGCAGTGGTAATGAGTTTGAGCCTAAAATTCAACTTCCTTACAATTGGCTAGTTTCAGACGAAGATGAAGCTGAGACGGTTCAAGCAAAGGGGAAGGAAACTGATCTCTTTAATCTTGGCCTTTACCTTTAG 3780 0.3746 MDASSTSQKSGHSTLKKCLLQPFHAMCGRKSNSNSHISNQDASAATSSDLIILSQGASPSSSSDSNILTHATTTTSSFDFNIMNQGASATTATSSDFNILNNGATAVTSSDFNLLNNGEASSSSLVSDNIQNNRYDVFISFRGSDTRNTFVDHLYAHLTGKGIFTFKDDTQLHKGGSISTQLRHAIKNSRVSVVVFSEDYPTSTWCLDEMSTIVNCCRNAKQIALPVFYDVDPSHVRRQNGVYEFAFDLHFKSNPHKVVEWKRDMTYLAEIAGYDIRNKPEFQEIKNIVQSITKKLDHRFLPSLDDLIGMQPHIEELESLLKLRSESDDDHGGCQVLGLWGMDGIGKTTLAKVLYDRISYQFDASCFIENVSKSYEDGGAIAVQKQIIHQTVKEFVLEGYSPSQISGVITRLYNMKVLIVLDDVDQLLELNVNVKMLRPGSRIIITTRDVHILELYEADIIHEIGLMNDNDARELLCRKAFKSDHSSSDYAELIPMILKYAQGLPLAIRVMGSFLYKRNTTQWRATLEGLENNPDSGIMKVLQSSFEGLELREKEIFLHIACFFDGEREDYVKRILHACGLQPDIGIPVIAEKSFITIRNQEIHMHKMLQVLGKKIVREQHPDQPSLWSRLWLYSDFYDAMTTQPVAIKAEAIIINQKEEEVSKFNELRGAYLSKMGSLKVLILYHSTFSERPISLSNSLRYILWNGYAFNSLPNFNPYKLVEFNMPDSSIQQLWTQTLNLPYLKRMDLSKSKNLMTTPCFEGMKNLERLDLTGCINLLMVHPSIGVLTKLVFLSLQQCINLESLDFSNAPRLTSLRVLRLSDCTKLKHTPDFSEMLLLQYLDMDRCASLFTIHKSIGALENLKFLSLRECKNLFRLPDNFYIMRSLTTLDLYGCSKFTRLPLGEITTSPLQSLVYLDLSFCNITIMPDVIGELRCLERLNLQGNKFTTLHSTLSCLHNLSYLNLSHCHRLQSLPELPIESGRSDLAGKYFKTTSESRNHRSGLYIFDSPNCYIGESLIANQHIYWLFTTWIIRLVKEPLHYRCGFDIIFPWHVETNGLYKDSVFSDLLFHFHHQFNGNTVVRMDCSTMAVDWAGFLFYVTFESNNHNHQSLSSSSSSLPCPFYLSFESEHTEERFDMRINLEHNQVQGRNYIWMIFISREHCHFVETGAQITFKACKGLVIKEWGLCVITKEDVEGSEWRPRTDLDLQVLEIKESSSGNEFEPKIQLPYNWLVSDEDEAETVQAKGKETDLFNLGLYL 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1323g00002 1259 Gene3D Ribonuclease Inhibitor 655 834 IPR032675 -
Vivi1323g00002 1259 Pfam NB-ARC domain 333 538 IPR002182 GO:0043531
Vivi1323g00002 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 560 IPR027417 -
Vivi1323g00002 1259 PRINTS Disease resistance protein signature 411 425 - -
Vivi1323g00002 1259 PRINTS Disease resistance protein signature 501 515 - -
Vivi1323g00002 1259 PRINTS Disease resistance protein signature 336 351 - -
Vivi1323g00002 1259 PRINTS Disease resistance protein signature 739 755 - -
Vivi1323g00002 1259 Gene3D - 293 461 IPR027417 -
Vivi1323g00002 1259 FunFam Disease resistance protein (TIR-NBS-LRR class) 131 298 - -
Vivi1323g00002 1259 SUPERFAMILY "Winged helix" DNA-binding domain 538 639 IPR036390 -
Vivi1323g00002 1259 Pfam Leucine rich repeat 913 969 IPR001611 GO:0005515
Vivi1323g00002 1259 SUPERFAMILY L domain-like 673 976 - -
Vivi1323g00002 1259 SMART till_3 134 271 IPR000157 GO:0007165
Vivi1323g00002 1259 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 135 805 IPR044974 GO:0006952
Vivi1323g00002 1259 ProSiteProfiles TIR domain profile. 133 296 IPR000157 GO:0007165
Vivi1323g00002 1259 SUPERFAMILY Toll/Interleukin receptor TIR domain 131 274 IPR035897 -
Vivi1323g00002 1259 Gene3D - 131 292 IPR035897 -
Vivi1323g00002 1259 Gene3D - 467 550 IPR042197 -
Vivi1323g00002 1259 Gene3D Ribonuclease Inhibitor 835 987 IPR032675 -
Vivi1323g00002 1259 Pfam TIR domain 135 297 IPR000157 GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1323g00002 135 940 WRKY Transcription Factor Family AT4G12020 29.532 9.04e-76 275