Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1322g00008 ATGGCCGCTTTTCTTCCACCTGGTGTTGTTTTCATGCCTAATGATGAGATTCTTATTGGCTATTACCTTGCCAACAAAAATAACGAAGAGCTCCATATTTTCAATGGCTCACACATGATTAAAGAGATGAACTTATATGACTCTAATCCCTTCGAATTGTCTCCCGCGTCATCCTATTCAATCTACAATGATAACGTAGTTTTAGGAACTAAAACTCTCTTTGTTTTCTATCTTGGAAAATCCCTAAATGATTCAGAAAGAACTAATTGGACTATGAATGAATATGCTTTGGCAGACAATCCTCAGGCTGGTTTTGTTCTTTGTAGAATATTTGATTGCCCAATAAAGATGGACGTGGATAATGAATTTGGGCCTTTATCTGATGTTGATGAAACTGATTGTGATGAAAGTGATAACGTGCTTGAGAAATTCGACGTATGA 441 0.3651 MAAFLPPGVVFMPNDEILIGYYLANKNNEELHIFNGSHMIKEMNLYDSNPFELSPASSYSIYNDNVVLGTKTLFVFYLGKSLNDSERTNWTMNEYALADNPQAGFVLCRIFDCPIKMDVDNEFGPLSDVDETDCDESDNVLEKFDV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1322g00008 146 SUPERFAMILY NAC domain 3 111 IPR036093 GO:0003677|GO:0006355
Vivi1322g00008 146 ProSiteProfiles NAC domain profile. 1 113 IPR003441 GO:0003677|GO:0006355
Vivi1322g00008 146 Pfam No apical meristem (NAM) protein 6 54 IPR003441 GO:0003677|GO:0006355
Vivi1322g00008 146 Gene3D NAC domain 55 115 IPR036093 GO:0003677|GO:0006355
Vivi1322g00008 146 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 61 113 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1322g00008 5 111 NAC Transcription Factor Family AT5G04410 30.065 4.15e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1322g00008 NAM 0.00018 No_clan