Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi131g00020 ATGAATCAAGATATAGATGTTTCACCATTTTTCCTTTGCCCTATTTCACTACAACTCATGAACGATCCTGTTACTGTCTCAACAGGAATAACCTACGACAGACAATCCATCGAAAAATGGCTCTTTTCGTCCCAAAACAATACATGTCCTGTCACAAAACAACAACTCTTACACGATCACCAAAATCTCATTATTCTCACACCAAACCACACTCTTCGTAGACTCATTCAAGCATGGTGCACCATTAACTCTTCTTATGGTGTCCAAAGGATTCCAACTCCAAAACCACCAACAACACAAACCCTTATAGAAAAACACCTCAAAGAAGCTTCTGAATCTTCGGATTCACCTCATCTGCTTATTCAATCACTCAGAAAGCTCAAAACAATAGCCTCCGAGAGCGAAACAAATCGACGGTGTATCGAATCTGCCGGTGCAGTAGAGTTCTTGGCATCAATAGTAACAAAAAACAACACAAACTGTTCATCTTCATCTTCAACAACAGAATCAACCGAAACTAATATTCTTGATGATGATAATATTGAAGGTTTTGCTTTTGACTTTGATATTGGTGCAGAAGATGAAGCTGTAAGCATCCTTTACAATCTTCATTTAACCGAACAAGGTTTGAAAACTCTCTTAAACTTCAACAATGGAGAATTTTTAGACTCTTTATTGAGGTTAATGCAAAAGGGTAATTATGATTCAAGAACATACGCAGTTTTTTTGTTGAAATCTATGTCAAAGGTTGCTGATCCATCAGAACTAGCAAATCTAAAAACCGAGTTTTTCGTCGAACTAGTTCAGCTTCTTAAAGATCAGATATCAAAAAAGGCGTCAAAGGCAACACTGCAAACATTGATTCCACTCGTTGAATTTGGGAGAAATAGAGTAAGAGCAGTGGAATCAGGCTGTGTTTCTGTTTTAATAGAACTTCTTCTTGATTGCAAAGAAAGGAAGCCGTGTGAGATGATTTTGGTGCTGTTGGAGATGTTATGTCAATCTGCTGATGGAAGAGCTGAACTCTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAAATTTTGAGAATTTCAACAATGGCTAATGATAGAGCAGTGAGGATTCTTCTATCAGTTGCAAGATTCTCTGCAACACATATAGTTGTTCAAGAAATGCTGCAAATAGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGGGAGATTCTTAAACTTCATGCAAAGTCTTGGAGTAATTCTCACTGTGTACCTACAAATTTGCTTGCTTCATACCCAACAAGTGGTTGA 1326 0.3748 MNQDIDVSPFFLCPISLQLMNDPVTVSTGITYDRQSIEKWLFSSQNNTCPVTKQQLLHDHQNLIILTPNHTLRRLIQAWCTINSSYGVQRIPTPKPPTTQTLIEKHLKEASESSDSPHLLIQSLRKLKTIASESETNRRCIESAGAVEFLASIVTKNNTNCSSSSSTTESTETNILDDDNIEGFAFDFDIGAEDEAVSILYNLHLTEQGLKTLLNFNNGEFLDSLLRLMQKGNYDSRTYAVFLLKSMSKVADPSELANLKTEFFVELVQLLKDQISKKASKATLQTLIPLVEFGRNRVRAVESGCVSVLIELLLDCKERKPCEMILVLLEMLCQSADGRAELLSHGCGLAIVSKKILRISTMANDRAVRILLSVARFSATHIVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAREILKLHAKSWSNSHCVPTNLLASYPTSG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi131g00020 441 SUPERFAMILY RING/U-box 5 87 - -
Vivi131g00020 441 PANTHER WDSAM1 PROTEIN 4 430 IPR045185 GO:0061630
Vivi131g00020 441 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Vivi131g00020 441 Pfam U-box domain 8 83 IPR003613 GO:0004842|GO:0016567
Vivi131g00020 441 SUPERFAMILY ARM repeat 107 423 IPR016024 -
Vivi131g00020 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Vivi131g00020 441 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vivi131g00020 441 Gene3D - 97 427 IPR011989 -
Vivi131g00020 441 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi131g00020 1 438 U-box Gene Family AT3G52450 53.499 3.53e-157 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi131g00020 - - tpra:123902305 735.717