Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1316g00004 ATGGGTCGTGTTAAACTCGAGATCAAAAGAATAGAGAATACAACAAATCGACAAGTTACATTCTCTAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCTATCCTATGTGATATTGATATTGCACTTATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTATATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGGTACCATACAGAAGGGGTATTCAAAATAAGGAGTTTTTGCTCAGGACACTTCAACAGTTGAGGAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGATATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTAAGTAGGTTACAACAACAACTTCAAATGGCAGAAGAGCAGATAAGGATATACGAACCCGACCCATTAAAGATGACATCTATGGCAGAGCTTGAAACCAGTGAAAAAAACGTAGTAGAAATATTGGCACGTGTCATGCAGAGAAAGGAACTTTTGTTGAATAATCATCTATCTTCGTATGATCCATCTGGTATTCAGGGGATGCCAAGCACTTTCGAAAATGTAGGTTGGCTGCAAGATGGTAGTCAGAACCATCAAAATATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACGGTGTACGGTTCATTTTCACAAGGAACAAGTTCAAATGTTGATCCAAGAACTATAGGTGAATGCCACGTGGCAAATCCAAATGATGCAAATCTTCAAGCATGGCCACAAGGATACACATTATATCCTCATCATCAACAACCTCAACAACATCAACAACAACATCAACATCAACATCAACATCATCATATTCAACATGACATGGTTGGAACTGATCATCATCAACAACATCATCATCACCATAATCTTCAAGATATGATGCCACATGGACAAATCAACATGCCCATCACTGCCTCACAAGTTGAACCACCAAAAAATGAATCAACAGATCAATATGATCAATGTAAACAACCTAATCATCAGCTTAATTCATGCTCAATGACACATACTAATTAA 1101 0.3724 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKRRIEDVLTRYINLPDQERDNAVSFPEVPYRRGIQNKEFLLRTLQQLRSENDIALHMSNPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSMAELETSEKNVVEILARVMQRKELLLNNHLSSYDPSGIQGMPSTFENVGWLQDGSQNHQNIFDASAPMDPLRDLSSTVYGSFSQGTSSNVDPRTIGECHVANPNDANLQAWPQGYTLYPHHQQPQQHQQQHQHQHQHHHIQHDMVGTDHHQQHHHHHNLQDMMPHGQINMPITASQVEPPKNESTDQYDQCKQPNHQLNSCSMTHTN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1316g00004 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 SUPERFAMILY Amine oxidase catalytic domain 244 322 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vivi1316g00004 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 292 - -
Vivi1316g00004 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 MobiDBLite consensus disorder prediction 328 366 - -
Vivi1316g00004 366 MobiDBLite consensus disorder prediction 298 320 - -
Vivi1316g00004 366 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vivi1316g00004 366 MobiDBLite consensus disorder prediction 279 366 - -
Vivi1316g00004 366 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vivi1316g00004 366 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1316g00004 366 Coils Coil 126 146 - -
Vivi1316g00004 366 FunFam MADS-box transcription factor 41 13 93 - -
Vivi1316g00004 366 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1316g00004 1 333 Type I MADS-box Gene Family AT1G22130 54.252 1.78e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1316g00004 SRF-TF 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1316g00004 - - gmx:100305913 528.865