Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1314g00004 ATGGATTTTTATCCAGAGACACTTGCACACATTAACAATGGCTTTGAGCTACACGATTTCATTGAAGATCCAAACTTTAATCAATTCATCAACTTGATTCGTGGGGAAGAAAATGAAGATACGACTACTATGTGTAACTTCAATTCTGACCTAATCATGAATCAAAGCTTTGTTGATAACTCATTCCTTTCATTTCCTACAAACACATTTGATCACTCCAATAATAATTTTGTCACCCCTTTTGATCCAACTTCTTCACTTGGCTCTTTCTCTTGTTTTGATGGAGAAGCTAAGGGTGAAATAAGAGAAGAAAATGATAATGATGATGATGATGATAATTATTCTTCTCCAACAACAACTACAAGTGGTGATACTAAGCCAAGGTTGAAAACGGATAGGTCCAAGACTTTGGAATCTGAGAGGAGGAGGCGCGGTCGAATGAAGGATAAGCTCTATGCATTGCGATCTTTGGTTCCCAATATATCAAAGATGGATAAGGCTTCTATAATTGGAGATGCTGTTTCATATATGCAAGAACTTCAATCACAAGCCAAGAAGCTTAAGGCTGAGGTTTCAGGACTTGAAGCATCCTTAGCAGCATCCAAATCTCATCAAGGATCAATTGAAAACCACAAAAAGATTCAATTCAATGATAACACTAGTTCAATATGCAAGAAAATTGTCCAGATGGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATAGTATGCAACAAAGGAGAAAGAGTGGCTGCTTCATTGTACAAGTCTCTTGAATCTTTGAGAGATTTCAATGTTCAAAATTCAAATTTGGCCACAGCTTCTGACAAATTTCTACTTACATTTTCATTTAATGTAAAAAACTCAGAGCCAATAATCAACCTGCCCAATTTAAAGCTATGGGTGATTGGAGCTTTTCTAAATCAAGGCTTTGAATTCTTACCTTCTTTTTAA 960 0.3563 MDFYPETLAHINNGFELHDFIEDPNFNQFINLIRGEENEDTTTMCNFNSDLIMNQSFVDNSFLSFPTNTFDHSNNNFVTPFDPTSSLGSFSCFDGEAKGEIREENDNDDDDDNYSSPTTTTSGDTKPRLKTDRSKTLESERRRRGRMKDKLYALRSLVPNISKMDKASIIGDAVSYMQELQSQAKKLKAEVSGLEASLAASKSHQGSIENHKKIQFNDNTSSICKKIVQMDMFQVDERGFYVKIVCNKGERVAASLYKSLESLRDFNVQNSNLATASDKFLLTFSFNVKNSEPIINLPNLKLWVIGAFLNQGFEFLPSF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1314g00004 319 MobiDBLite consensus disorder prediction 126 145 - -
Vivi1314g00004 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 200 IPR036638 GO:0046983
Vivi1314g00004 319 Gene3D - 124 197 IPR036638 GO:0046983
Vivi1314g00004 319 Pfam Helix-loop-helix DNA-binding domain 136 181 IPR011598 GO:0046983
Vivi1314g00004 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Vivi1314g00004 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 304 - -
Vivi1314g00004 319 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 127 197 - -
Vivi1314g00004 319 Coils Coil 177 197 - -
Vivi1314g00004 319 MobiDBLite consensus disorder prediction 101 145 - -
Vivi1314g00004 319 SMART finulus 137 186 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1314g00004 7 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.165 2.82e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1314g00004 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1314g00004 K26214 - gmx:100778649 364.77