Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1314g00001 ATGGAAGTCACATATGGACCCCCACGATATGTTATGAATAATCGAATGATTCCTCACGCCCTTTATCCAACTCCTAACGCTCTTTATCATATTCGTGGTAGAAATCAACCTATGATGACTATCCAACCGACATATGCTTATGTCCAAGACAACCACTTTATTCATCACGAAAATAACATCAACCATGTACCAATAAGAAGAGACATAATGCCTACCGATAGATGGTTTGATGCCAATTTCGAAAGAAATCAATCAGTTCGAAATATTCGAAATATCTTGCCAGCTTATGCTTATGCACAAGACAACCGCTTTAGTCACCACGAAAACATCAACCAGGTTCCAGTAAGATGGTTTTATTCCAATCTTGAAAGACGTCAATTTGGGAGGAGTATCCGAAATGTGTTGCCAACTTATGCTAATGTCCGAGACAACCACTTTATTTTTCAAGAAAACAACATCAACCAAGTTCCAATAAGAAGAGAAATAATACCGACCCATAGATGGTCTGGCACCAATAGAGAGACAAGTCGACATAGGTTGAACACTCGAGATGTCTTTTCAGCGGATGTTTATGGCCAAGTTGACCACTATATTCTTCAGGAAAACAACACCAACCAAGCTCCAGTAAGAAGTGGCATTATACCTACCCAGAGAAGGAATAACACCAATTTAGAGAGAAATCAACCTAGGTTGAGTACTCGAGATGTGTTGTCAGCTGAAGCTAATGTTCAAGATGATCGCTTTATTTTTTCTGAAAGAAACATCAACCAAGCTCAATCCGAAAGAGATGTTGAAGTTTCTAAGAGACATCATCATACCAATCTTAAGATAATTCAAGTTGAAGAAGGAACAAAAGATTCTGAAACCATGACATGTTCAATTTGCCTTGTAGAACTTTTAGTTGGATCGAGAGCTATCCAGTTGCCTAGTCCATGTTTGCATGTCTATCATGAAGATTGCATTCTTAAGTGGTTGGATATATCTAACACGTGTCCTTTGTGTCGTAGAAATGTTCGATGA 1020 0.3853 MEVTYGPPRYVMNNRMIPHALYPTPNALYHIRGRNQPMMTIQPTYAYVQDNHFIHHENNINHVPIRRDIMPTDRWFDANFERNQSVRNIRNILPAYAYAQDNRFSHHENINQVPVRWFYSNLERRQFGRSIRNVLPTYANVRDNHFIFQENNINQVPIRREIIPTHRWSGTNRETSRHRLNTRDVFSADVYGQVDHYILQENNTNQAPVRSGIIPTQRRNNTNLERNQPRLSTRDVLSAEANVQDDRFIFSERNINQAQSERDVEVSKRHHHTNLKIIQVEEGTKDSETMTCSICLVELLVGSRAIQLPSPCLHVYHEDCILKWLDISNTCPLCRRNVR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1314g00001 339 SUPERFAMILY RING/U-box 291 338 - -
Vivi1314g00001 339 ProSiteProfiles Zinc finger RING-type profile. 292 335 IPR001841 -
Vivi1314g00001 339 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 141 336 - -
Vivi1314g00001 339 Pfam Ring finger domain 291 335 IPR001841 -
Vivi1314g00001 339 SMART ring_2 292 334 IPR001841 -
Vivi1314g00001 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 339 IPR013083 -
Vivi1314g00001 339 SMART ringv_2 291 335 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1314g00001 288 335 C3H Transcription Factor Family AT4G12190 48.980 1.42e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1314g00001 - - vvo:131641191 701.049