Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1305g00013 ATGGGAACTGTTAGTAACATTGGTTTCTCTTCCGTATTCAGAGTTTCTTTGAACACAGAGGTGGTTTCAAAGCAGAGGAAACACAAATCATCATGCAGTTTTAGGATTCCTCTGAACAAAATCTGTTGTAAACTATCAGAAAGTGGGATTGAAGAGAGTCCTATCACCAAAAAGGTATCTACTAAATCTAAGGATATGATGGAAGAATACAATATAGCTATGAAGAGCATGATGAGGAATCCTTATGAGTATCATCATGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCTCAACCACAGAAGCCTGAAGATGTAGATCATCTTAAGAATGAAGAAGGTGTGGCATACATTCTAAACTTGCAACAGGATAAAGATGCTGAGTTTTGGGGAATAGACTTGCAGTCGATAATAAAAAGGTGTCGCGAAGTTGAAATTCGGCACATGAGGAGACCTGCAGTAGATTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTTTCATCTTTGGAATGGGCGATTTCTGAGGGAAAAGGAAAAGTTTATGTGCATTGTACTGCAGGACTTGGAAGAGCTCCCGCAGTAGCAATATCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGCGGACCGAATAAAAAAGCGATACGTGGAGCTACTTATGATCTGGCTAAGAATGATCCATGGAAGGAGCCGTTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGACTGGGAGAGGAACCTGATTCAAAATGGTGTCCGCGCTCTTCGTGGAACTTGA 846 0.4019 MGTVSNIGFSSVFRVSLNTEVVSKQRKHKSSCSFRIPLNKICCKLSESGIEESPITKKVSTKSKDMMEEYNIAMKSMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKNEEGVAYILNLQQDKDAEFWGIDLQSIIKRCREVEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAISYLFWFCDMNLNEAYDMLTSKRPCGPNKKAIRGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNGVRALRGT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1305g00013 281 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 74 281 - -
Vivi1305g00013 281 CDD DSP_laforin-like 90 237 IPR045204 GO:0019203
Vivi1305g00013 281 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 18 250 - -
Vivi1305g00013 281 Pfam Dual specificity phosphatase, catalytic domain 112 231 IPR000340 GO:0008138|GO:0016311
Vivi1305g00013 281 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 227 IPR000387 GO:0016311|GO:0016791
Vivi1305g00013 281 ProSiteProfiles Dual specificity protein phosphatase domain profile. 91 248 IPR020422 GO:0006470|GO:0008138
Vivi1305g00013 281 Gene3D Protein tyrosine phosphatase superfamily 74 281 IPR029021 -
Vivi1305g00013 281 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 233 IPR029021 -
Vivi1305g00013 281 SMART dsp_5 91 233 IPR020422 GO:0006470|GO:0008138
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1305g00013 29 281 Protein tyrosine phosphatase (PTP) family AT3G10940 74.510 4.10e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1305g00013 - - gmx:100805592 468.388