Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1302g00004 ATGCACCACAACCATTCCCTCCCATGGTTGTGGATTATTGCTTTACTCTCCTCAACCTCAACCACCACCCTTGTTGTTGTTCAATGCAAAACCTCTTCACAAGATGTTGCGGCCCTCAATGTTATGTACACAAGCTTGAATTCTCCTTCCCAACTCACTGGTTGGAAATCAAGCGGAGGCGATCCTTGTGGCGAATCCTGGGAAGGAATCAAATGCTCTTCTTCATCTGTCACCGAAATAAATTTAGCGGACATGGATCTAAGCGGATCAATGGGCTACCAATTGGCAAACTTGAAATCAGTTACCGACTTTGATTTGAGCAACAACAATTTCAACGGCGATATACCATATCAACTCCCTCCAAATGCTCGTAACATAGATCTTTCTAAGAATCAATTCACCGGAAGTATACCTTATTCCTTTTCTCAGATGAAGAATCTCGAATCTCTAAATCTTGCACATAATAAGCTCAATAACCAGCTGGGAGATATGTTTGCAAGCCTCGGTAAACTCAAACAATTGGATGTATCATACAATTCACTATCAGGAGACCTGCCTCAGAGTTTAAAATCAGCCAAAAGCCTAAAGAAGATACATCTGCAAAATAATAAACTCACTGGTTCAATAAATGGCCTTGCCCGTCTTCCACTTGACGATGTGAATGTTGAGAACAACAAATTTACGGGTTGGGTTCCCGAGTCGTTAAAGGATATAACTAGCTTGAGAACTGGAGGAAACTCTTGGTCAACTGGGCCAGCACCGCCTCCTCCCCCCGGTACACCTCCTATCGAGCGTGCTCAGAAAAAGACTGGAAAATCGGTTATAACTGGAGTAGCTATAGCCGGAATAGGTTTCGCTGTGCTGATTGTAATCATACTCATTGTGGCTCTTACTAAAAGAAGAAGGTCATCTGTACCTTCTTCTCATTTTATTGATGAAGATAGGCATAGCCAGCACAGATCTTTTACACCCCTTGCATCTCAGGAGTTGTCTAAAGATTTAGGTCCTGATGACTGCACAGAATACAGCGGATTTAAAGCAATGGATTCCACTGCAATTGACATAAAGGCATTACAAAAAAATCCATCAACTGGTGTTAGGTCATCAGCCTCTGATTGTGTGCAAACTTTTACTGACAACGAGTTTGCAAATCGCCTAAATTCTAAAAGAAGCACGTCGGTTCGTTGTACTCCTTTTTCATTGGGAGAGTTGCAAAATGGTACTGGTAACTTCGCTTCAGGCCGACTTCTTGGTGAAGGAAACCTTGGACCTGTTTATCGGGCCAAATATCCCGATGGAAAGGTATTGGCTGTAAAAAAAATCAACCCTTCATTTTTTGATGGGGCTCGTCCTGAGGAATTCTCTCAGATTTTATCAAGCATCTCCAAACTTCATCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAACAGGAGCATATGTTAGTATATGATTATTTCAGAAATGGTTCTCTCCATGACTTTTTGCACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACAAGAATCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTACCTACATGAAAGTTGTTCTCCGCCTTTAGTTCACAAGAATATCAAATCTGCCAATATTTTGCTTGACACAGATTTGAATCCCCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACAAGCCAAAATCTCGGGGCAGGATACAATGCACCAGAATGCACAAAACCATCAGCCTATACCCTGAAGAGCGATGTATACAGTTTTGGCGTAGTGATGCTCGAGCTTTTGACAGGTCGAAAGCCTCTAGACAGTTCAAGGCCAAAATCAGAGCAATGTCTCGTTCGTTGGGCTACACCACAGCTTCATGACATACTTGCTGTGGAAAAAATGGTAGACCCTGCATTGCGGGGACTTTACCCTCCTAAATCACTCTTTCGGTTTGCTGATATCATCGCCCTTTGTGTTCAGTCTGAACCTGAATTTCGGCCACCTGCATCGGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAGCGTTCAAGTCTGAAAATGAGAGAAGATCTTGGTGTGTTTGGTCGGATAGATGATGCTGATGATTGA 2115 0.4293 MHHNHSLPWLWIIALLSSTSTTTLVVVQCKTSSQDVAALNVMYTSLNSPSQLTGWKSSGGDPCGESWEGIKCSSSSVTEINLADMDLSGSMGYQLANLKSVTDFDLSNNNFNGDIPYQLPPNARNIDLSKNQFTGSIPYSFSQMKNLESLNLAHNKLNNQLGDMFASLGKLKQLDVSYNSLSGDLPQSLKSAKSLKKIHLQNNKLTGSINGLARLPLDDVNVENNKFTGWVPESLKDITSLRTGGNSWSTGPAPPPPPGTPPIERAQKKTGKSVITGVAIAGIGFAVLIVIILIVALTKRRRSSVPSSHFIDEDRHSQHRSFTPLASQELSKDLGPDDCTEYSGFKAMDSTAIDIKALQKNPSTGVRSSASDCVQTFTDNEFANRLNSKRSTSVRCTPFSLGELQNGTGNFASGRLLGEGNLGPVYRAKYPDGKVLAVKKINPSFFDGARPEEFSQILSSISKLHHPNIAELVGYCSEQEHMLVYDYFRNGSLHDFLHLSDDFSKPLTWNTRIRIALGTARAVEYLHESCSPPLVHKNIKSANILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRKPLDSSRPKSEQCLVRWATPQLHDILAVEKMVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPPASEVVQALVRLVQRSSLKMREDLGVFGRIDDADD 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1302g00004 704 CDD STKc_IRAK 417 681 - -
Vivi1302g00004 704 Gene3D Phosphorylase Kinase; domain 1 371 487 - -
Vivi1302g00004 704 MobiDBLite consensus disorder prediction 241 268 - -
Vivi1302g00004 704 Gene3D Transferase(Phosphotransferase) domain 1 488 696 - -
Vivi1302g00004 704 PANTHER LEUCINE RICH REPEAT KINASE 2 20 140 - -
Vivi1302g00004 704 Pfam Protein tyrosine and serine/threonine kinase 414 678 IPR001245 GO:0004672|GO:0006468
Vivi1302g00004 704 ProSiteProfiles Protein kinase domain profile. 411 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1302g00004 704 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Vivi1302g00004 704 SUPERFAMILY Protein kinase-like (PK-like) 390 678 IPR011009 -
Vivi1302g00004 704 Gene3D Ribonuclease Inhibitor 29 255 IPR032675 -
Vivi1302g00004 704 ProSiteProfiles Leucine-rich repeat profile. 194 216 IPR001611 GO:0005515
Vivi1302g00004 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 32 259 - -
Vivi1302g00004 704 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 376 487 - -
Vivi1302g00004 704 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Vivi1302g00004 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 488 692 - -
Vivi1302g00004 704 SUPERFAMILY L domain-like 30 243 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1302g00004 12 704 Strubbelig Receptor Gene Family AT1G78980 59.772 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi1302g00004 PK_Tyr_Ser-Thr 9.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1302g00004 - - psat:127107173 1231.08