Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1302g00002 ATGGTTGTGGATTATTGCTTTACTCTCCTCAACCTCAACCACCACCCTTGTTGTTGTTCAATGCAAAACCTCTTCACAAGATGTTGCGGCCCTCAATGTTATGTACACAAGCTTGAATTCTCCTTCCCAACTCACTGGTTGGAAATCAAGCGGAGGCGATCCTTGTGGCGAATCCTGGGAAGGAATCAAATGCTCTTCTTCATCTGTCACCGAAATAAATTTAGCGGACATGGATCTAAGCGGATCAATGGGCTACCAATTGGCAAACTTGAAATCAGTTACCGACTTTGCAGTGATTTGAGCAACAACAATTTCAACGGCGATATACCATATCAACTCCCTCCAAATGCTCGTAACATAGATCTTTCTAAGAATCAATTCACCGGAAGTATACCTTATTCCTTTTCTCAGATGAAGAATCTCGAATCTCTAAATCTTGCACATAATAAGCTCAATAACCAGCTGGGAGATATGTTTGCAAGCCTCGGTAAACTCAAACAATTGGATGTATCATACAATTCACTATCAGGAGACCTGCCTCAGAGTTTAAAATCAGCCAAAAGCCTAAAGAAGATACATCTGCAAAATAATAAACTCACTGGTTCAATAAATGGCCTTGCCCGTCTTCCACTTGACGATGTGAATGTTGAGAACAACAAATTTACGGGTTGGGTTCCCGAGTCGTTAAAGGATATAACTAGCTTGAGAACTGGAGGAAACTCTTGGTCAACTGGGCCAGCACCGCCTCCTCCCCCCGGTACACCTCCTATCGAGCGTGCTCAGAAAAAGACTGGAAAATCGGTTATAACTGGAGTAGCTATAGCCGGAATAGGTTTCGCTGTGCTGATTGTAATCATACTCATTGTGGCTCTTACTAAAAGAAGAAGGTCATCTGTACCTTCTTCTCATTTTATTGATGAAGATAGGCATAGCCAGCACAGATCTTTTACACCCCTTGCATCTCAGGAGTTGTCTAAAGATTTAGGTCCTGATGACTGCACAGAATACAGCGGATTTAAAGCAATGGATTCCACTGCAATTGACATAAAGGCATTACAAAAAAATCCATCAACTGGTGTTAGGTCATCAGCCTCTGATTGTGTGCAAACTTTTACTGACAACGAGTTTGCAAATCGCCTAAATTCTAAAAGAAGCACGTCGGTTCGTTGTACTCCTTTTTCATTGGGAGAGTTGCAAAATGGTACTGGTAACTTCGCTTCAGGCCGACTTCTTGGTGAAGGAAACCTTGGACCTGTTTATCGGGCCAAATATCCCGATGGAAAGGTATTGGCTGTAAAAAAAATCAACCCTTCATTTTTTGATGGGGCTCGTCCTGAGGAATTCTCTCAGATTTTATCAAGCATCTCCAAACTTCATCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAACAGGAGCATATGTTAGTATATGATTATTTCAGAAATGGTTCTCTCCATGACTTTTTGCACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACAAGAATCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTACCTACATGAAAGTTGTTCTCCGCCTTTAGTTCACAAGAATATCAAATCTGCCAATATTTTGCTTGACACAGATTTGAATCCCCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACAAGCCAAAATCTCGGGGCAGGATACAATGCACCAGAATGCACAAAACCATCAGCCTATACCCTGAAGAGCGATGTATACAGTTTTGGCGTAGTGATGCTCGAGCTTTTGACAGGTCGAAAGCCTCTAGACAGTTCAAGGCCAAAATCAGAGCAATGTCTCGTTCGTTGGGCTACACCACAGCTTCATGACATACTTGCTGTGGAAAAAATGGTAGACCCTGCATTGCGGGGACTTTACCCTCCTAAATCACTCTTTCGGTTTGCTGATATCATCGCCCTTTGTGTTCAGTCTGAACCTGAATTTCGGCCACCTGCATCGGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAGCGTTCAAGTCTGAAAATGAGAGAAGATCTTGGTGTGTTTGGTCGGATAGATGATGCTGATGATTGA 2097 0.4282 MVVDYCFTLLNLNHHPCCCSMQNLFTRCCGPQCYVHKLEFSFPTHWLEIKRRRSLWRILGRNQMLFFICHRNKFSGHGSKRINGLPIGKLEISYRLCSDLSNNNFNGDIPYQLPPNARNIDLSKNQFTGSIPYSFSQMKNLESLNLAHNKLNNQLGDMFASLGKLKQLDVSYNSLSGDLPQSLKSAKSLKKIHLQNNKLTGSINGLARLPLDDVNVENNKFTGWVPESLKDITSLRTGGNSWSTGPAPPPPPGTPPIERAQKKTGKSVITGVAIAGIGFAVLIVIILIVALTKRRRSSVPSSHFIDEDRHSQHRSFTPLASQELSKDLGPDDCTEYSGFKAMDSTAIDIKALQKNPSTGVRSSASDCVQTFTDNEFANRLNSKRSTSVRCTPFSLGELQNGTGNFASGRLLGEGNLGPVYRAKYPDGKVLAVKKINPSFFDGARPEEFSQILSSISKLHHPNIAELVGYCSEQEHMLVYDYFRNGSLHDFLHLSDDFSKPLTWNTRIRIALGTARAVEYLHESCSPPLVHKNIKSANILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRKPLDSSRPKSEQCLVRWATPQLHDILAVEKMVDPALRGLYPPKSLFRFADIIALCVQSEPEFRPPASEVVQALVRLVQRSSLKMREDLGVFGRIDDADD 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1302g00002 698 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 370 481 - -
Vivi1302g00002 698 Pfam Protein tyrosine and serine/threonine kinase 408 672 IPR001245 GO:0004672|GO:0006468
Vivi1302g00002 698 Gene3D Ribonuclease Inhibitor 56 248 IPR032675 -
Vivi1302g00002 698 SUPERFAMILY L domain-like 99 237 - -
Vivi1302g00002 698 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 482 686 - -
Vivi1302g00002 698 ProSiteProfiles Protein kinase domain profile. 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1302g00002 698 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 78 253 - -
Vivi1302g00002 698 PANTHER LEUCINE RICH REPEAT KINASE 2 68 679 - -
Vivi1302g00002 698 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Vivi1302g00002 698 SUPERFAMILY Protein kinase-like (PK-like) 384 672 IPR011009 -
Vivi1302g00002 698 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Vivi1302g00002 698 MobiDBLite consensus disorder prediction 235 256 - -
Vivi1302g00002 698 Gene3D Phosphorylase Kinase; domain 1 365 481 - -
Vivi1302g00002 698 Gene3D Transferase(Phosphotransferase) domain 1 482 690 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1302g00002 99 698 Strubbelig Receptor Gene Family AT1G78980 60.362 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vivi1302g00002 PK_Tyr_Ser-Thr 9.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1302g00002 - - psat:127107173 1067.76