Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1298g00012 ATGGGAAGTAAATGGAAGAAAGCAAAGGTGGCTCTTGGTCTTAATCTCTGCATGTTTGTTCCAAGAACATTAGACGATGATTTTCCTCCTTCCACGGTGGTTTCTGAGAGGCTGTCGGATGCTGCTCTTCTCTCTCCGGCCAACTGGGAGAAGGGCTCTTCCCGGCCAACTACTCCGGTGCCGTCTTTTCATGGTTTGAGACTTTCCAAAAGTAGCAGCAAATCGTCCAAGCAAACTTGTGCAATATGCTTAACCAAAATGAAGCAGGGATCTGGTCAAGCTATATTCACAGCAGAATGTTCACATTCTTTCCATTTCCATTGCATTGCTTCAAATGTGAAACATGGGAACCAAATATGTCCGGTGTGTCGAGCAAAGTGGAAGGAAATACCCTTGTCGGGTTCTAGTTTGGAACCTATCCAAGGTAGAGTAACACCAAGTCCAATAAATTGGCCTCAAAATGATGCTTTGATGGCTGTGGTCCATCGTCTACCGCTTCCTCTACCTCATCCTCGTCGCGATTTGAATAGGCGGCATATTGTACCAGTTTATCAGGCTTCTGAGCCAGGTGTATTTGATGACGATGAATCTTTGAATCATCATCATGCAATCTCTGGGAGAAGTGTTTGCAGTAATAGTACTGAAGATGCTGATGCTGTTCGAGCAATGGAGATTAGAACATACCCTGAAGTGTCTTCCACTCCAAGGTCCAACACTTGTGCTAACTTCACAGTTTTGGTTCATCTCAAAGCTACTGCTGCAGCCGCCGCTTCTACTAAAAGACAAAACCTTAGCAGAAATCAGACTAGCTTGACGCAGATTTCACAGACGCCACGTACTCCAGTTGACCTGGTCACCGTGCTTGACGTCAGTGGTAGCATGGCCGGAACTAAGCTCGCACTACTAAAAAGGGCTATGGGATTTGTGATACAGAACCTAGGCGCTAATGACCGGCTTTCTGTTATTGCTTTCTCTTCCACAGCTCGCCGTCTCTTTCCATTATGTAAGATGACTGATTCTGGGCGGCAACAGGCATTACAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATTGCGGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGACCGAAAAGAAAAGAATCCAGTTGCGAATATTATTCTGTTGTCGGATGGACAAGATAATTACACTGTCGGTGGCTCTGGAAATAGCCAACCTCAACCAAACTATCATTTGCTTCTGCCGGCTTCCATCAGTGGTCGAGACAATTCAGGATTTCAAATTCCCGTGCATGCTTTTGGATTTGGTGCAGACCATGATGCCTCATCAATGCATTCAATTTCTGAGATCTCTGGCGGAACATTTTCATTTATTGAAACTGAAGCTGTGTTGCAGGATGCATTTGCACAATGCATTGGAGGACTTCTTAGTGTCGTTATTCAAGAGTTGCAAGTGGCGATTGAGTGTGTACACCCTGATCTCGGTCTTGTTTCGCTTAAAGCAGGAAGTTATCCTAGTCGTTTGATGGCGGATGGTCGCAAAGGATTTATCGACGTTGGTGACTTGTATGCTGATGAAGAGAGGGATTTTTTAGTCTCGGTTAACATTCCAGCTACGTCGAGCAGCGAAACATCGTTGATAAAGGTCAAATGTTTTTACAAGGATCCCTTGACTCAGGAGACAGCAACATTGGAAAGTGATGAAGTAAAGATTGAGAGGCCTGAAGTAGCCGCCGGGCAGGTTGTAATATCTCTTGAAGTGGACAGACAACGCAACAGGCTCCAAGCAGCCGATGCGATGGCACAGGCACGGACCGCAGCTGAACGTGGAGACCTCACTGAAGCAGTATCAATCCTTGAAAACTGTCGGAAGATTCTTTCAGAGACTGTATCAGCTAAATCTCACGACCGCCTTTGTGTTGCATTAGATGCTGAACTCAAAGAAATGCAAGAGCGGATGGCGAGTAGGCATGTGTACGAAGCATCTGGGAGAGCATATATACTCTCCGGTTTAAGTTCACACTCGTGGCAAAGAGCAACTGCAAGAGGCGATTCTACTGACAGTTCAAGTCTCGTTCAAGCTTATCAGACACCATCAATGGTTGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCGGGTCAGAGGCTTCTCCAGCCACTGTTGTCATACAGATCACAACCAAGCCCAAGGTAA 2196 0.4577 MGSKWKKAKVALGLNLCMFVPRTLDDDFPPSTVVSERLSDAALLSPANWEKGSSRPTTPVPSFHGLRLSKSSSKSSKQTCAICLTKMKQGSGQAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGSSLEPIQGRVTPSPINWPQNDALMAVVHRLPLPLPHPRRDLNRRHIVPVYQASEPGVFDDDESLNHHHAISGRSVCSNSTEDADAVRAMEIRTYPEVSSTPRSNTCANFTVLVHLKATAAAAASTKRQNLSRNQTSLTQISQTPRTPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGANDRLSVIAFSSTARRLFPLCKMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVANIILLSDGQDNYTVGGSGNSQPQPNYHLLLPASISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVIQELQVAIECVHPDLGLVSLKAGSYPSRLMADGRKGFIDVGDLYADEERDFLVSVNIPATSSSETSLIKVKCFYKDPLTQETATLESDEVKIERPEVAAGQVVISLEVDRQRNRLQAADAMAQARTAAERGDLTEAVSILENCRKILSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMVEMLTRSQAMLLGSPSGQRLLQPLLSYRSQPSPR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1298g00012 731 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 78 705 - -
Vivi1298g00012 731 SMART VWA_4 281 468 IPR002035 -
Vivi1298g00012 731 MobiDBLite consensus disorder prediction 49 70 - -
Vivi1298g00012 731 SUPERFAMILY vWA-like 278 469 IPR036465 -
Vivi1298g00012 731 Coils Coil 629 649 - -
Vivi1298g00012 731 CDD vWA_C3HC4_type 282 456 - -
Vivi1298g00012 731 CDD RING-H2_WAVH2 78 129 - -
Vivi1298g00012 731 Gene3D von Willebrand factor, type A domain 283 470 IPR036465 -
Vivi1298g00012 731 Pfam RING-like zinc finger 80 109 IPR001841 -
Vivi1298g00012 731 Pfam von Willebrand factor type A domain 283 466 IPR002035 -
Vivi1298g00012 731 Pfam VWA / Hh protein intein-like 633 705 IPR032838 -
Vivi1298g00012 731 SMART ring_2 80 123 IPR001841 -
Vivi1298g00012 731 SUPERFAMILY RING/U-box 76 130 - -
Vivi1298g00012 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 131 IPR013083 -
Vivi1298g00012 731 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Vivi1298g00012 731 MobiDBLite consensus disorder prediction 50 70 - -
Vivi1298g00012 731 ProSiteProfiles VWFA domain profile. 283 469 IPR002035 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1298g00012 69 124 C3H Transcription Factor Family AT1G57730 42.857 3.11e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1298g00012 - - gmx:100818239 1226.46