Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1290g00001 ATGAGTAGCACTTCGACGCCAAAACGTAAAAATTCATCATTATCAAGTGGGGGTGACGGTGGCAAAAAGCCAAAGCGTAGCCGGTTATTATTACCTGTGGAAGAAGCTGATCAAAGAGGTAACGCGGAAGGAGGAGAAGGAACTCCAAAGGAAGGTAGACGGTCATTATTATCGGGAGATAACGGGGGAAGAGGAGAAGTTGCTCTAAAGAAAGGTCCGTGGACAAAGGAAGAGGATGAAATTTTGGTAGATCATATTAAGAAGTACGGAGAGGGAAAGTGGAAGGCAGTCCAGAAGAATTCAGGACTTGCTCGCGATGGGAAAAGCTGTCGTCTACGATGGTCGAATCACTTGAGGTCAGGACTGAAAAGGGGTCCATTTACTGCTGAAGAAAAACACAAAATCCTTGAGTTCCACTTTCTGAAGGGAAGCAAGTGGACTCAAATGGCTGCATTGTTGCCGGGACGTACAGATAACGAGATAAAGAACTTTTGGAATGCAAGATATAGGAAACGGCAACGAGCGGGCTTACCAATCTATCCTGACGAGATAACATCCAAATATTCGTTTAATGGCAGTCAAGAAAGTGCTGACACATTGGCAAATGAACCCAGCCAGCATGATGAAACAGAAAACTTCAACTTGGATATAACTGACTTGGACCTTAAATATTTCAAATTCCACCCAGATATGTTGCCGTCAAATTTTGACACACAAGATTACAAACCAAAAAGTGACTTGGTTGGACGGTGCTCAGATTCGTCTCATAATACCTTACCCATGCGTAGAGCAGCAGTAGTGCGGCGCAGATATTTGAACAGTAGCAGTAGTGCTGCTGTCCTGGAAGTATTTGATCAGTATGGCAAATATCCTATATTGTCTACTCCATGTGATCCGATTCTTAACACATGCCTTCTTCATGGATATGATAATCCTATAACTGGTTTTCATGCCGCGTCAAATATCTCTTCTTCTGAGCCCATATATGGGTCCATGAGTTTTGAGCTCCCTTCATTCCAAAACTCACAGACTCAACAGTGTACCAGGAGTGGCATGTATGTGCCGCCACTTACCTCATTTGAGTCTGCTGACACGCCGGTTCACGCTCCTCTGATTGAGCCTTGTCCATCCGTTCCAGTTTCTTCGGGTTGCAATCATTTAATTGATTCATCAGTATGCTACAATTCAGATCAAAATTTGCAAGGTTCAAGTATTGATTCATTGCAAGCAAATACTGATAGCACGGCTCCCAATGAAGCAGGCATTAGTACACAATGGAATGGAAGCAACTTCTTAAGATGGACCCGCCCCGACATCGAAACCACTCAGAATTTTGATATTTACGGCGGTGCATTTAATGATCAGCTTCCAGCTTATTGTTCTTTCGGCGAAGAAGATAATTTGAATCAGAAAGATTTGGCGCTACCAGATGCTGTGCTTGACTCTGGCTGGCATTGA 1458 0.4362 MSSTSTPKRKNSSLSSGGDGGKKPKRSRLLLPVEEADQRGNAEGGEGTPKEGRRSLLSGDNGGRGEVALKKGPWTKEEDEILVDHIKKYGEGKWKAVQKNSGLARDGKSCRLRWSNHLRSGLKRGPFTAEEKHKILEFHFLKGSKWTQMAALLPGRTDNEIKNFWNARYRKRQRAGLPIYPDEITSKYSFNGSQESADTLANEPSQHDETENFNLDITDLDLKYFKFHPDMLPSNFDTQDYKPKSDLVGRCSDSSHNTLPMRRAAVVRRRYLNSSSSAAVLEVFDQYGKYPILSTPCDPILNTCLLHGYDNPITGFHAASNISSSEPIYGSMSFELPSFQNSQTQQCTRSGMYVPPLTSFESADTPVHAPLIEPCPSVPVSSGCNHLIDSSVCYNSDQNLQGSSIDSLQANTDSTAPNEAGISTQWNGSNFLRWTRPDIETTQNFDIYGGAFNDQLPAYCSFGEEDNLNQKDLALPDAVLDSGWH 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1290g00001 485 Gene3D - 70 123 - -
Vivi1290g00001 485 ProSiteProfiles Myb-like domain profile. 66 118 IPR001005 -
Vivi1290g00001 485 SUPERFAMILY Homeodomain-like 69 165 IPR009057 -
Vivi1290g00001 485 Pfam Myb-like DNA-binding domain 74 134 - -
Vivi1290g00001 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 173 IPR017930 -
Vivi1290g00001 485 MobiDBLite consensus disorder prediction 1 71 - -
Vivi1290g00001 485 ProSiteProfiles Myb-like domain profile. 119 169 IPR001005 -
Vivi1290g00001 485 FunFam MYB-related transcription factor 70 123 - -
Vivi1290g00001 485 Gene3D - 126 200 - -
Vivi1290g00001 485 SMART sant 70 120 IPR001005 -
Vivi1290g00001 485 SMART sant 123 171 IPR001005 -
Vivi1290g00001 485 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 47 427 - -
Vivi1290g00001 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 122 IPR017930 -
Vivi1290g00001 485 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1290g00001 485 MobiDBLite consensus disorder prediction 21 50 - -
Vivi1290g00001 485 CDD SANT 73 118 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1290g00001 68 374 MYB Transcription Factor Family AT5G06100 35.952 2.92e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1290g00001 Myb_DNA-bind_6 1.2e-14 CL0123