Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1288g00001 ATGGAAAATAATGCTAATGAAAATTTCTTTAGCACATCCTCATCATCAACATCAACACCAACTTCTTCTAACTCAAACTCATTCACCAATCATGACACCAAAAATAGTCCTCAAAGTAAGTGCAAGAAAAGAGAGAGAAACAATGAAAATGACACAAAACACCCTACATATAGAGGAGTAAGAATGAGAGCATGGGGAAAGTATGTATCTGAGATAAGAGAGCCAAGAAAAAAATCAAGAATATGGCTTGGAACATACCCTACTGCTGAAATGGCTGCTAGAGCTCATGATGTAGCTGCTTTAGCTATAAAGGGTAATTCAGCTTACCTCAATTTCCCTAACTTGGCTCAAAATCTTCCAAGGCCTTCAACAACATCACCTAAAGACATTCAACTTGCAGCTGCAAAAGCAGCAGCCACTGTTTTTGTGGAAATTAAGGATTCTTGTCAAGGTGATGAAAATGGTCAAGATCAAGATCAAGTTTCAAGTTCAACTCATTCTTCAATAGAGAATGTTCAAGAGTGTAATTCTAGTTCTCCTTCTTCTACTAATACTACTACTACAAATGATGATGATAATGATGATACACTCTTTGATCTACCGGATCTATTTCCGGATGGAAAACATGGACTTGTTTCTTATTCTTCTTGGAATTTATGTGCGGTTGATAGTGGACTTCGGCTCGACGAGCAATTTTTATCGTCCTGGGAGTATTACTAG 720 0.3736 MENNANENFFSTSSSSTSTPTSSNSNSFTNHDTKNSPQSKCKKRERNNENDTKHPTYRGVRMRAWGKYVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSAYLNFPNLAQNLPRPSTTSPKDIQLAAAKAAATVFVEIKDSCQGDENGQDQDQVSSSTHSSIENVQECNSSSPSSTNTTTTNDDDNDDTLFDLPDLFPDGKHGLVSYSSWNLCAVDSGLRLDEQFLSSWEYY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1288g00001 239 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Vivi1288g00001 239 MobiDBLite consensus disorder prediction 149 199 - -
Vivi1288g00001 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 205 - -
Vivi1288g00001 239 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Vivi1288g00001 239 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Vivi1288g00001 239 MobiDBLite consensus disorder prediction 1 58 - -
Vivi1288g00001 239 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vivi1288g00001 239 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Vivi1288g00001 239 MobiDBLite consensus disorder prediction 36 58 - -
Vivi1288g00001 239 MobiDBLite consensus disorder prediction 154 191 - -
Vivi1288g00001 239 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vivi1288g00001 239 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vivi1288g00001 239 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vivi1288g00001 239 MobiDBLite consensus disorder prediction 1 35 - -
Vivi1288g00001 239 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1288g00001 43 235 AP2-EREBP Transcription Factor Family AT2G44940 52.336 1.83e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1288g00001 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1288g00001 - - psat:127129327 331.643