Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1283g00003 ATGGTTTCTCTTGAAGAATCTCGTTCGAATTCGAATCGTTTTCCTTTACCGAGAATCTATCAGTATCATAATCATTCGTCTGTTTCCTCGAAATCGCAGCGGAATATTGGAAGATCGATGCGAACCAGAAGATCTAGTATCTTTGATGAAGATAACAGTAGTTGCACGTTTACCGAGAGATCAACGTGTGTATCGGAGAATTTAACCGATTCTGTCGTCGACCTCCGTCTCGGTGAGCTCGCTTCCCGGAATATTAAATCCGGGAGGTCGTCTACGACTGAGCAGGACCTTCTTGATCTTTCGCAGGCTTTCAGTGAGTATTCTGCTTGTAGTAGTGATATTTCCGGTGAGTTGCAGCGGTTGGCGACTCTTCCGTCGCCGGAGTGTAATTTGAAGAGTGATAGTGGAGGTGATAGTGGAGGTGGCGGTGAGGAGGAGGTTGAGGTGGAGCCTTGCATGGGGTTTTTGCAGAGGGAGAATTTTTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGTGTGGATGGTTTACAGTCGTCGTCGGTGGCGGTGAAACGTTCTGCTGCGGCGAAGCTGAGGTTGCTTGCTAAAAATAGGGCTGATAATAGAGTTCTGATTGGTGAGTCCGGTGCGGTGCCGTTTCTGGTTCCTCTGCTGAGGTGTACTGATCCATGGACGCAAGAACATGCTGTGACCGCGCTTTTGAATCTGTCGCTTCACGAGGATAACAAGAAGGTAATATTCAATGCAGGAGCTGTGAAATCGTTGATTTATGTGTTGAAAACAGGAACGGAAACTTCGAAGCAGAACGCGGCGTGTGCGCTTTTGAGTTTAGCTTTGGTGGAAGAGAATAAGAGCTCAATCGGGGCTTCCGGTGCGATTCCGCCATTGGTTTCGCTTCTACTGAACGGTTCCAACAGAGGGAAGAAAGACGCATTAACAACTCTGTACAAGCTTTGTTCTGTTAAGCAGAACAAGGAGAGAGCGGTGAGTGCCGGTGTGGTGAAGCCGCTTGTGGAGCTGGTGGCGGAGCAAGGGAATGGTATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCGGGGATTGAAGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATAGCGGCACTTGTGGAAGCCATTGAAGACGGGTCTGTGAAAGGAAAAGAATTTGCTGTTTTGACTCTTCTTCAGCTTTGTGCTGACAATGTTACAAACAGAGGGTTACTTGTTAGAGAGGGTGGGATTCCTCCCCTTGTAGCTCTTTCCCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCAACTTCAACTTCTTAG 1392 0.4777 MVSLEESRSNSNRFPLPRIYQYHNHSSVSSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNIKSGRSSTTEQDLLDLSQAFSEYSACSSDISGELQRLATLPSPECNLKSDSGGDSGGGGEEEVEVEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPFLVPLLRCTDPWTQEHAVTALLNLSLHEDNKKVIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADNVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1283g00003 463 SMART arm_5 289 329 IPR000225 GO:0005515
Vivi1283g00003 463 SMART arm_5 207 247 IPR000225 GO:0005515
Vivi1283g00003 463 SMART arm_5 371 411 IPR000225 GO:0005515
Vivi1283g00003 463 SMART arm_5 413 453 IPR000225 GO:0005515
Vivi1283g00003 463 SMART arm_5 248 288 IPR000225 GO:0005515
Vivi1283g00003 463 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Vivi1283g00003 463 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
Vivi1283g00003 463 FunFam U-box domain-containing protein 4 164 316 - -
Vivi1283g00003 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Vivi1283g00003 463 PANTHER U BOX DOMAIN-CONTAINING 126 452 - -
Vivi1283g00003 463 FunFam U-box domain-containing protein 4 317 458 - -
Vivi1283g00003 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Vivi1283g00003 463 Gene3D - 321 462 IPR011989 -
Vivi1283g00003 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 342 IPR000225 GO:0005515
Vivi1283g00003 463 SUPERFAMILY ARM repeat 174 452 IPR016024 -
Vivi1283g00003 463 MobiDBLite consensus disorder prediction 25 45 - -
Vivi1283g00003 463 Gene3D - 158 320 IPR011989 -
Vivi1283g00003 463 MobiDBLite consensus disorder prediction 25 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1283g00003 155 456 U-box Gene Family AT2G23140 49.032 1.04e-85 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1283g00003 - - tpra:123898555 791.186