Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1281g00003 ATGGACAGGTTAGAAATGATGATTACATTCCACATGAGAGTTTTGTTCTTTTTCCTTTGGATCTTCCTCTCTTCATTTGGTAAAAGCCTGTTAACCTGTGAAACAACATCACCACATGATTCTAGCTACCATTGTAATGAAAATGAGTTACAAAATCATCACTGTGAAACATTTGCACTCTTTTTCACAAACTCTCACTTTTCCTCCCTCTCCAACCTCACCCTATACTTAGGACTCAACAGGTTCTCCATAGCAGAAACCAATGGTTTCTCTGCGGAAACCGAGTACCTTCCTCAAAATCATCCCCTTCTAATACCAATTGATTGCAAATGCAAAAAAGGTGGTTATTTTCAAGCTGAATTGACAAAAACTACCATCAAAGGTGAGAGTTTTTTTGACATTTCTCAATCACTTGAAGGCTTAACTACTTGCAAGGCTATTAAAGATAACAACCTTGGTGTCTCACCTTGGAACCTTGATGCTAATCACAAGTTGATCATCCCTTTGAAATGTGCTTGCCCTTTTTCTTCCTTTGTCATACCAAAACCAAAACTTCTTCTTTCTTATCCTATAAGTGAGAATGATACTATTTCAAGTTTGGCCTTAAAGTTCCATATTACAAAAGAAGCTATTCTTATTGCCAATAACTTCTCATCATCATCGTCATCATCGTCAGAAGTTCTTAGAACTAGAAGCTTAGAGCCTTTTACCTCTATACTAATTCCATTGAACGGTAACCCTTTCCTTGATCCTTTAACTAAGCCAAAACAACCGAATTCGGATTTTCCAAGAACCAACAATATTCCAGGAATTAGGCCACACAAGAAGTCAAAAATGAAGAAGAGTGAGCTTTTCATTGGCCTAATTGGTGTTGCAATTGGAGTTTTCTTTTCTGTCGTGGTAACCGTTTTCTTCATTTGGTTGAAGAAAAGAAAGGTGGAAGAAAATTCATGCAAAGAAAGAGATATGGAGCTACAACATCTGAATCAAAGTGTGAGAACCACAAGTGATAAGAAAGTTTCATTTGAGGGGTCACAGGACACTCTTGATAGTAAAACCATCGATGCAACGTCGCGTAAGATGTTGTTGGAGACATACACAATTGAAGATTTGAGAAAAGTAACAGAAGATTTCAGCTCAAATTTTCATATTGAAGGGTCAGTTTTTCATGGTTGTTTAAATGGTAAGAACATGGCAATCAAAAGAGTAAAAACCGATATTCTGTCAAAACTAGAACTTGGCCTTTTCCATGATTCACTTCATCATCATCCAAACATATTGAACCTTCTTGGTATAAGTATCTCAGAAGAGTCATCAGAGTCGGAATCTTTTTTGGTTTTCGAGTATGCTAAAAACGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAATCAGTTCATTGCTTCTTGCTATTGTTTCTTGAATTGGAAGCAAAGGCTTAGAATTTGTGTTGATGTGGCAAGTGCTTTGGATTACATGCACAATGTTATGAATCCAAGTTATGTGCATAGAAATGTGAAGAGTAGGAACATCTTTTTAGATGAAGAGTTTGGTGCAAAGTTAGGAAATTTTGGGATGGCAAGTTTTGTTGTGAATGAAACTGAGGACCCTCAATTTTATTCAAGCAATTATGCTTCTTGGAGCATTGGTTATTTAGCACCTGAATATGTTCACCAAGGTGTGGTTTCAACAAGCATTGACATCTTTGCATTTGGTGTGGTTTTGTTAGAAGTTTTATCTGGTCAAACACCTATAAATGGATCAAGTGATAGAGGTGAAGGGAGTGTTTGGCTTAGTGACAAAGTAAAGAGTATTTTGAAGTCAGAGAATGATGATGTGAATGAGTTGTTAAGAGAGTGGATAGACAGTGCATTAGGTGAGAGTTACTCATTTGATGAAGCTTTGAAAGTTGCTTATATTGCAAAAGCTTGTGTGGAGGAAGATGCATGTTTGAGGCCTAATGCAAGGGAAATTGTTGAGAAGCTATCAACATTGTTGGAGGAGGAAGTACCTAATGAGGAAAATCAAGTTTTGATGAGTGAAAATTCTTGCAAACCTCTTGTGGATGCACTAGGAAGCAATATGTGA 2097 0.371 MDRLEMMITFHMRVLFFFLWIFLSSFGKSLLTCETTSPHDSSYHCNENELQNHHCETFALFFTNSHFSSLSNLTLYLGLNRFSIAETNGFSAETEYLPQNHPLLIPIDCKCKKGGYFQAELTKTTIKGESFFDISQSLEGLTTCKAIKDNNLGVSPWNLDANHKLIIPLKCACPFSSFVIPKPKLLLSYPISENDTISSLALKFHITKEAILIANNFSSSSSSSSEVLRTRSLEPFTSILIPLNGNPFLDPLTKPKQPNSDFPRTNNIPGIRPHKKSKMKKSELFIGLIGVAIGVFFSVVVTVFFIWLKKRKVEENSCKERDMELQHLNQSVRTTSDKKVSFEGSQDTLDSKTIDATSRKMLLETYTIEDLRKVTEDFSSNFHIEGSVFHGCLNGKNMAIKRVKTDILSKLELGLFHDSLHHHPNILNLLGISISEESSESESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWKQRLRICVDVASALDYMHNVMNPSYVHRNVKSRNIFLDEEFGAKLGNFGMASFVVNETEDPQFYSSNYASWSIGYLAPEYVHQGVVSTSIDIFAFGVVLLEVLSGQTPINGSSDRGEGSVWLSDKVKSILKSENDDVNELLREWIDSALGESYSFDEALKVAYIAKACVEEDACLRPNAREIVEKLSTLLEEEVPNEENQVLMSENSCKPLVDALGSNM 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1281g00003 698 Gene3D Transferase(Phosphotransferase) domain 1 451 688 - -
Vivi1281g00003 698 ProSiteProfiles LysM domain profile. 187 241 IPR018392 -
Vivi1281g00003 698 FunFam PTI1-like tyrosine-protein kinase 3 450 679 - -
Vivi1281g00003 698 Gene3D Phosphorylase Kinase; domain 1 380 450 - -
Vivi1281g00003 698 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 672 - -
Vivi1281g00003 698 Pfam LysM domain 191 221 IPR018392 -
Vivi1281g00003 698 SUPERFAMILY Protein kinase-like (PK-like) 367 665 IPR011009 -
Vivi1281g00003 698 ProSiteProfiles Protein kinase domain profile. 368 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1281g00003 698 Pfam Protein tyrosine and serine/threonine kinase 412 620 IPR001245 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1281g00003 43 691 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.533 1.16e-139 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vivi1281g00003 PK_Tyr_Ser-Thr 4.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1281g00003 - - tpra:123891373 1139.02