Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi127g00027 ATGAATATTCAGGAGGAGACTCAGCTCACTCTTGCTCTTCCTGGTTCCACCAAATCAACCACACCTGTAACAGCCACAAAACGTGCCTTCTCCACTACTACACTTGATCTTCATCTTGGCACCAAACATGTGGTGGGATGGCCACCGGTGAGAGGAAACAGAAAGAATATTGGGATAAAAAGTTGCAAGTATGTCAAAGTTGCGGTAGATGGAGCTCCGTATCTAAGAAAAGTCGATCTCGAAGTTTACGACGGTTATGAGAATCTTCTGAGGGCAGTGGATAGCATGTTTGTCGGTACTAATTTGATGAGTGAGAAGAAATTCATGCTTACCTATGAGGACAAAGATGGTGACTGGATGTTGCTTGGAGATGTACCCTGGAAAATGTTTGTTGAATCATGCAAGAGAATAAGGCTTATGATTAGCATGGAGGATAGTACTAGTTGCAGTTCCAGATGTACGGGCTCCAGGGAGAAGAATAATTAG 486 0.4342 MNIQEETQLTLALPGSTKSTTPVTATKRAFSTTTLDLHLGTKHVVGWPPVRGNRKNIGIKSCKYVKVAVDGAPYLRKVDLEVYDGYENLLRAVDSMFVGTNLMSEKKFMLTYEDKDGDWMLLGDVPWKMFVESCKRIRLMISMEDSTSCSSRCTGSREKNN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi127g00027 161 SUPERFAMILY CAD & PB1 domains 53 141 - -
Vivi127g00027 161 Pfam AUX/IAA family 100 144 IPR033389 -
Vivi127g00027 161 Pfam AUX/IAA family 60 98 IPR033389 -
Vivi127g00027 161 Gene3D - 58 154 - -
Vivi127g00027 161 ProSiteProfiles PB1 domain profile. 62 146 IPR000270 GO:0005515
Vivi127g00027 161 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 144 IPR003311 GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi127g00027 10 137 B3 DNA Binding Superfamily AT4G23980 29.286 1.69e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi127g00027 AUX_IAA 2.5e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi127g00027 K14484 - gmx:100500488 175.637