Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi127g00022 ATGCTTGATGACTTAATAAATAATATAATACACGAGGTTCAAGAACTATACAATATTGACATGGTTGATGAAGAAAGTAATAACTTGATTGAAACACCTTTATATCACAATTCACAACCAAAAGTGTTCAATTTGAGCTTGGAGATGGAGATTCATAAAGATGATATTGGTGATGAACTAGAGATGGAAATTGAAGAAGAATATTATGATGAATCCATACAAGAAGTTGGAATGGTTCCAGCTTCAAAAGAAGCCATCAAGACAATGAAAACAACATGTGATTTGAATGTTACAAAATTGAGAGACATATTATGTTGTACTATATGTATGGATGAATTTGATCATATTCATGACACATCAAAAGTATGCACCATGCCTTGTAATCATGTGTTTCATGAACAATGTATCGTCAAGTGGTTACAAACTAGCAATACTTGTCCTTTGTGTCGATATTCAATGCCCACTGCTCTTGGTAGTTGA 480 0.3271 MLDDLINNIIHEVQELYNIDMVDEESNNLIETPLYHNSQPKVFNLSLEMEIHKDDIGDELEMEIEEEYYDESIQEVGMVPASKEAIKTMKTTCDLNVTKLRDILCCTICMDEFDHIHDTSKVCTMPCNHVFHEQCIVKWLQTSNTCPLCRYSMPTALGS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi127g00022 159 CDD RING-H2_PA-TM-RING 105 150 - -
Vivi127g00022 159 Pfam Ring finger domain 106 150 IPR001841 -
Vivi127g00022 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 154 - -
Vivi127g00022 159 ProSiteProfiles Zinc finger RING-type profile. 106 150 IPR001841 -
Vivi127g00022 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Vivi127g00022 159 SUPERFAMILY RING/U-box 105 155 - -
Vivi127g00022 159 SMART ring_2 106 149 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi127g00022 76 155 C3H Transcription Factor Family AT5G60820 37.349 1.04e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi127g00022 - - vvo:131624945 307.76