Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi127g00021 ATGGAACTCCAACATGAAAGTTATAGGAATCACAAGCATCCAAATCTTAGAGATCTCTTAGAACTCAAGGTTCATATTCATCACTTTGATAATTTAAGTCACATACAATGTGAAACATTCAACCCTCTAACCATAGTTTTCAAGAAATTATTTAGTCAAGAAGGTCAAGATTACCTTCGAACACATTTTTCCAAACTTTTCTTTTTAACCTCTAATATGCTTGATGACTTAATAAGTAATATAATACATGAGGTTCAAGAACTATACAATATTGACATGGTTGATGAAGAAAGTAATAACTTGATTGAAACACCTTTATATCACAATTCACAACCAAAAGTGTTCAATTTGAGCTTGGAGATGGAGATTCATAAAGATGATATTGGTGATGAACTAGAGATGGAAATTGAAGAAGAATATTATGATGAATCCATACAAGAAGTTGGAATGGTTCCAGCTTCAAAAGAAGCCATCAAGACAATGAAAACAACATGTGATTTGAATGTTACAAAATTGAGAGACATATTATGTTGTACTATATGTATGGATGAATTTGATCATATTCATGACACATCAAAAGTATGCACCATGCCTTGTAATCATGTGTTTCATGAACAATGTATCGTCAAGTGGTTACAAACTAGCAATACTTGTCCTCTGTGTCGATATTCAATGCCCACTGCTCTTGATAGTTGA 696 0.3233 MELQHESYRNHKHPNLRDLLELKVHIHHFDNLSHIQCETFNPLTIVFKKLFSQEGQDYLRTHFSKLFFLTSNMLDDLISNIIHEVQELYNIDMVDEESNNLIETPLYHNSQPKVFNLSLEMEIHKDDIGDELEMEIEEEYYDESIQEVGMVPASKEAIKTMKTTCDLNVTKLRDILCCTICMDEFDHIHDTSKVCTMPCNHVFHEQCIVKWLQTSNTCPLCRYSMPTALDS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi127g00021 231 ProSiteProfiles Zinc finger RING-type profile. 178 222 IPR001841 -
Vivi127g00021 231 SMART ring_2 178 221 IPR001841 -
Vivi127g00021 231 Pfam Ring finger domain 178 222 IPR001841 -
Vivi127g00021 231 CDD RING-H2_PA-TM-RING 177 222 - -
Vivi127g00021 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 229 IPR013083 -
Vivi127g00021 231 SUPERFAMILY RING/U-box 177 227 - -
Vivi127g00021 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 92 226 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi127g00021 148 227 C3H Transcription Factor Family AT5G60820 37.349 2.66e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi127g00021 - - vvo:131624944 457.603