Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1275g00003 ATGATTCTACCATTCACAATATTTCATATCATTGTTTTAATAATATCTCCTCGATTAGCCTCAGCACAAGATGTAAGCATAGCACAATATGGTTGTAATTCAACATGTGGAACATTTTCTGTTCCTTTCCCATTCGGAATGGATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTAGGCAGAAATTCTTCTGATATTCCTAAACCTTACTTGAAGTCGTTAAATCTTGAAGTAACAGACTTTAACACAGACTCGAGCATCGTTGAGATTATGAGCCCAATTTACCATTCCAATTGTCAAAACAACAAAAATAGTAGCAACAGTAATAAAATCGTTACACTTAGAGACAGTCCTTTCATATTTTCACAGGCTGATAACACGTTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTTCAGTCAAATGGGACAACTGTTGGTGGTTGTGTATCAATTTGTGACGACGACAACAATTTCAATATAGGTAGCGACGGTTGTAATGGAAGGTATTGTTGTAAAACCTCATTGCCTTCACATCTTTCAGAGTTTAACGCAACAATAAGAGGTTTAAGCGAACAGAGTAGTGATGGGTGTGTTTATGCTTTGATTGCAAGTGATTATTGGATAACATTAGATAATTCATATATGAGTAATTATGAGATTGAGATATTGAATGAGTTGAAAAATAAGGAATATGCTCCTGCGATGCTTGAGTGGGAGATTTTGAATGATATGTTAATAAATTCCACATTTCAACTACCTCCAAATTGTTACGACTCCAACGTTACTTCTTTAAGTAACGGAAACACCGGAAGGCAATGTCGATGCTCCTACCTTGATGGACAATACTATGGCAATCCCTACCTTGCTGGACACTGCCCAGATCGAGAATACCACTTTAATAAGAATAACCGATGGAAGAAGTGGGTTATTGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTCCTCATCGGTCTACTGTTTTTGTACAAATTTTTGAAACGAAGAATGATTAAGAAACGCAAGGAAAATTTCTTCAAAAGAAATGGTGGTTTGTTGTTGCAAAAAAGAATGTCTTCAGGAGAAGTCAATATTGACAGAACTACTCTCTTCACTTTAAAGGATTTAAAGAAAGCCACTGACAATTTCAATAAGGATAGAGTTCTTGGAAAGGGAGGCCAAGGCACCGTTTACAAAGGCATGTTGGTGGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAATGTTGAAGAGTTCATTAATGAGTTTGTTATTCTTTCACAAATCAACAATAGAAATGTTGTTAAATTATTGGGGTGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCAAATGGTAACCTTTTTGAGTATCTGCATGACCAAAATGAGGACATTCCAATGACATGGGACATGCGTTTGAGAATTGCCACTGAAGTTGCTGGGGCTTTATTTTATTTGCACTCAGTTGCATCTCAACCAATTTATCATAGAGATGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCTGATTTTGGTGCATCAAGAATAATTTCAATTGAAGCAACTCACCTTACCACAATGGTTCAAGGTACTTTTGGATACTTAGACCCAGAATATTTTCACACTAGCCAATTTACAGAGAAAAGTGATGTGTACAGCTTTGGGGTAGTTCTTGGTGAGCTTTTAACCGGTAAGAAGCCAATATCCTCTACATCAAGATCTGGGGAATCACAAAGTTTAGCTTCCTATTTTGTTCAGTGTATGGAGGAGAATATGTTATTTGACGTAATTGACAAAAGGATCACAAAAGGAGGGGAGATAGAACATATCACTGCAGTTGCAAATCTTGCATTTAGATGCTTAGAAATGAATGGAAGAAAACGACCAACGATGAAAGAAGTAACATTAGAATTAGAAGGGATCATGGGATTGAATAAGAAGCTTAATGCACAACAAAACCATGAGGAAATTGAACTTTCTGGAATTGAAGAGTACCAACCTTGGGATGGGTATTCTGCATCAAATTCATTGCCAATTGTCAGCAGCCAAACACAATCCACAGACTGA 2127 0.3639 MILPFTIFHIIVLIISPRLASAQDVSIAQYGCNSTCGTFSVPFPFGMDEPHCYAHKWFEIECKLGRNSSDIPKPYLKSLNLEVTDFNTDSSIVEIMSPIYHSNCQNNKNSSNSNKIVTLRDSPFIFSQADNTFLAVGCNNLAFLQSNGTTVGGCVSICDDDNNFNIGSDGCNGRYCCKTSLPSHLSEFNATIRGLSEQSSDGCVYALIASDYWITLDNSYMSNYEIEILNELKNKEYAPAMLEWEILNDMLINSTFQLPPNCYDSNVTSLSNGNTGRQCRCSYLDGQYYGNPYLAGHCPDREYHFNKNNRWKKWVIVGISSSLGSIGFLIGLLFLYKFLKRRMIKKRKENFFKRNGGLLLQKRMSSGEVNIDRTTLFTLKDLKKATDNFNKDRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGNVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEVAGALFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLGELLTGKKPISSTSRSGESQSLASYFVQCMEENMLFDVIDKRITKGGEIEHITAVANLAFRCLEMNGRKRPTMKEVTLELEGIMGLNKKLNAQQNHEEIELSGIEEYQPWDGYSASNSLPIVSSQTQSTD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1275g00003 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Vivi1275g00003 708 Gene3D Phosphorylase Kinase; domain 1 357 462 - -
Vivi1275g00003 708 FunFam Wall-associated receptor kinase 2 359 462 - -
Vivi1275g00003 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 669 IPR045274 GO:0007166
Vivi1275g00003 708 SMART serkin_6 389 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00003 708 Pfam Protein kinase domain 389 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00003 708 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Vivi1275g00003 708 CDD STKc_IRAK 395 661 - -
Vivi1275g00003 708 SUPERFAMILY Protein kinase-like (PK-like) 374 656 IPR011009 -
Vivi1275g00003 708 ProSiteProfiles Protein kinase domain profile. 389 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00003 708 Gene3D Transferase(Phosphotransferase) domain 1 463 685 - -
Vivi1275g00003 708 FunFam Wall-associated receptor kinase 2 463 680 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1275g00003 10 676 Receptor kinase-like Gene Family AT1G16260 44.509 4.72e-179 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi1275g00003 Pkinase 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1275g00003 - - vvo:131640934 1007.67