Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1275g00002 ATGATTCTACCATTCACAATATTTCATATCATTGTTTTAATAATATCTCCTCCACTAGCCTCAGGTTGTAATTCAACATGTGGAAGTTTGTATATTCCTTTCCCATTCGGAATGGATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTAGGCAGAAATTCTTCTGATATTCCTAAACCTTACTTGAAGTCGTTAAATCTTGAAGTAAGAGATTTTGATGCAAACTCGAGCTTGGTTACGATTATGAGCCCAATTTACCATTCCAATTGTAAAAATAACAAAAACAGTAGCAACAGTAATAAAATTGTTACTCTTAGAGACAGTCCTTTCGTATATTCACAGAATGAAAACACATTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTTCAGTCAAACGGGACAACCGTTGGTGGTTGTGTATCAATTTGCGACGACGACAACAGTAACAATTTCAATTTAGGTAACTACGATTGTAATGGAAAGTATTGCTGTAAGACTTCTTTGCCTTCACATCTTTCAGAGTTTAATGCAACAGTAAGAGGTTTAGGCGAACTGAGTAGTGGTGGGTGTGGTTATGCTTTGATTGCAAGGACTTATTGGATAATATTCGGTAGTTCGGATAACAGCGCATATGAGATTGAGAAATTGAATGAATTGAAGAATATGGAATATGTTCCTGCACTTCTTGAGTGGGAGATTTTGAATGATATGTTAATTAATTCCACATTTCAACTACCTCCAGATTTTTATGACTCCAACGTTACTTCTTTAAGTAGTAAAAACACTGGTAGGCAATGTCGATGCTCCGAGGGTTACTACGGCAATTCCTACCTTCCTGGAGGTTGCACAGAAAATCAAAGATTTTCATATAAGAATAATCGGGTGAAGAAGTGGGCTATTAATGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTGCTCATTGGTCTATGGTTTTTGTACAAATCTATAAAACGAAGAATGGTAAAGAAACGCAGAGAAAACTTCTTCAAAAGAAACGGTGGTTTGTTGTTACAAAAAAGAATGTCTTCAGGAGAAGTAAATGTTGATAGAACTACTCTCTTCACCTTAAAGGATTTAAAAAAAGCCACCGACAATTTCAATAAGAACAGAGTTCTTGGAAAGGGTGGCCAAGGTACAGTTTACAAGGGCATGTTGGTGGATGGTAAAATTGTTGCAGTGAAAAAATTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTGATTCTTTCACAAATCAACAATAGAAATATTGTCAAACTATTGGGATGTTGTTTGGAGACAGAAATTCCGTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAATATCTGCATGACCAAAATGAGGACATTCCAATGACATGGGACATGCGTTTGAGAATTGCCTGCGAAATTGCTGGAGCTTTATTTTATTTGCACTCAGTTGCATCTCAGCCAATTTATCATAGAGACATCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAGGTAGCAGATTTTGGAGCATCAAGAATAATTTTAATTGAAGATACTCATCTTACCACAATGGTTCAAGGTACTTTTGGATACATAGACCCTGAATATTTTTACACTAGCCAATTTACCGAGAAAAGTGATGTTTATAGCTTTGGAGTAGTCCTTGCTGAACTTTTAACTGGTAAAAAGCCAATATCTTCTACAACAACATCCGAGGATTCACAAAATTTATCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATGTTGTTTGACATTATTGACAAAAGGACCATAGAAGGAGGGGAGAAAGAACATATCATTGCAGTTGCAAATCTTGCATATAGATGCTTAGAAATAAATGGAAGAAAACGACCAACTATGAAAGAAGTCACATTAGAATTGGAAGGGATCAGTGGATTCAATAACAAGTTTAATGCACAACAAAATGACGAGGAAATTGAGTTTTATGGAATTGAACAATATCAACCTTGGGATGGGTTTTCTGCATCAAATTCATTATCAATTATGAGCAACCAAACACACTCCACAGACTCGAAGCTTATGCACATTCGTGCAATAGAATAG 2130 0.3563 MILPFTIFHIIVLIISPPLASGCNSTCGSLYIPFPFGMDEPHCYAHKWFEIECKLGRNSSDIPKPYLKSLNLEVRDFDANSSLVTIMSPIYHSNCKNNKNSSNSNKIVTLRDSPFVYSQNENTFLAVGCNNLAFLQSNGTTVGGCVSICDDDNSNNFNLGNYDCNGKYCCKTSLPSHLSEFNATVRGLGELSSGGCGYALIARTYWIIFGSSDNSAYEIEKLNELKNMEYVPALLEWEILNDMLINSTFQLPPDFYDSNVTSLSSKNTGRQCRCSEGYYGNSYLPGGCTENQRFSYKNNRVKKWAINVGISSSLGSIGLLIGLWFLYKSIKRRMVKKRRENFFKRNGGLLLQKRMSSGEVNVDRTTLFTLKDLKKATDNFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNIVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIACEIAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKVADFGASRIILIEDTHLTTMVQGTFGYIDPEYFYTSQFTEKSDVYSFGVVLAELLTGKKPISSTTTSEDSQNLSSYFVQCIEENMLFDIIDKRTIEGGEKEHIIAVANLAYRCLEINGRKRPTMKEVTLELEGISGFNNKFNAQQNDEEIEFYGIEQYQPWDGFSASNSLSIMSNQTHSTDSKLMHIRAIE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1275g00002 709 CDD STKc_IRAK 386 652 - -
Vivi1275g00002 709 Gene3D Transferase(Phosphotransferase) domain 1 454 676 - -
Vivi1275g00002 709 Gene3D Phosphorylase Kinase; domain 1 351 453 - -
Vivi1275g00002 709 FunFam Wall-associated receptor kinase 2 454 671 - -
Vivi1275g00002 709 SMART serkin_6 380 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00002 709 Pfam Wall-associated receptor kinase galacturonan-binding 23 86 IPR025287 GO:0030247
Vivi1275g00002 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Vivi1275g00002 709 Pfam Protein kinase domain 380 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00002 709 ProSiteProfiles Protein kinase domain profile. 380 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00002 709 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 657 IPR045274 GO:0007166
Vivi1275g00002 709 SUPERFAMILY Protein kinase-like (PK-like) 360 649 IPR011009 -
Vivi1275g00002 709 FunFam Wall-associated receptor kinase 2 350 453 - -
Vivi1275g00002 709 CDD EGF_Lam 268 289 IPR002049 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1275g00002 18 701 Receptor kinase-like Gene Family AT1G16260 43.803 2.22e-179 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi1275g00002 Pkinase 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1275g00002 - - vvo:131640934 949.888