Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1275g00001 ATGGCTTCAGCATGCCGTATCCGTAACAATGCAAGGAATCTGTTGAAGCTTGTCGGAGAGTATGGACCTAGGTGCAAGAGGGAGCTCTGGAGGGTTCAGTACGCTCTTAGTCGGATCTGTAACAATGAAAGGAATCTGTTGACCCTGGATGAGAAGAACCCTCGTTGGATCTGTAACAATGAAAGGAATTTGTTGACACTGGATGAGAAGAACCCTCATTGGATCTTTGAAGATGAAGCACTTTTGATGAGAATATTTCAATATGGTCTTCTTGATGAAACTCAGAACAAGCTCGATTATGTCTTGGCTCTCACTATTCAGAATTTTCTCGAGCGAAGACTTCAGATACTTGTCTTCAAGTCTGGAATGGCTAAGTCCATTCATCATGCTAGAGTTCTTATCTGGCAAAGGCACATCGGTCTTTTGTCATCCTTGAATCACCTATTTTGCTTCTCCGTAACTATAATCAGTGGACCGGTGTTAATCATGGTTTTGGAAAAGGATAATGCTATTGCTAATTGGCATGCTTTAATGGGCCATACCAATGCAAGCAAGGCCAAGATTACTCACCCTCACAGCACCAGTAGTAAAACCGTTACTCTTACAGACAGCCCTTTCCTATATTCACAGGCTGAGAATACGTTTCTAGCTGTGGGATGTAACAGTCTTGCTTTTCTTCAGTCAAACGGGACCACCGTTGGTGGTTGTGTATCAATTTGTGACGACAACAAAAACAACAGTAACAATTTCAATATAGATAGCAACGGTTGTAATGGAAGGTATTGTTGTACGACCTCATTGCCTTCACATCTTTCAGAGTTTAACGCAACAATAAGAGGTTTAAGCGAACACAGTAGTCAAGGGTGTGGTTATGCTTTGATTGCAAGGAGTTATTTTATGGGTGATTATGAGACTGAGAAAGAGTTGAAGAATAAGGAATATGCTCCTGCAATGCTTGAGTGGGAGATTTTGAATTATATGTTAACTAATTCCACATTTCAACTACCTCCAAATTGTTATGACTCCAACGTTACTTCTTTAAGTAACAGAAACACTGGTAAGCAATGTCGATGCTCGTCCTGGCAGCAAGACGATGACTTTGACTCTCCCTTCCTTGATGGAGACTACTATGGCAATCCATACATTGCTGGAGGCTGTAAAGGTCCAGAGTACTACTTTCATAAGAATAATCAATGGAAGAAGTGGGTTATTGTAGGAATTTCATCAAGTCTCGGATCCTTGGGTTTCCTCATCGGTCTACTGTTTTTGTACAAAGTTTTGAAACGAAGAATGATAAAGAAACGCAAGGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTGCAAAAAAGAATGTCTTCGGGAGAAGTCAATGTTGACAGAACTACTCTCTTCACATTAAAGAATTTAAAGAAAGCCACTGACAATTTCAATAAGGATAGAGTTCTTGGAAAGGGAGGGCAAGGCACCGTTTACAAAGGCATGTTGGTGGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAATGTTGAAGAGTTCATTAATGAGTTTGTTATTCTTTCACAAATCAACAATAGAAATATTGTCAAACTATTAGGATGTTGTTTGGAGACAGAAATTCCGTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATCTGCATGACCAAAATGAGGACATTCCAATGACATGGGACGTGCGTTTGAGAATTGCTAGTGAAGTTGCTGGAGCTTTATTTTATTTGCACTCGGTTGCATCTCAACCAATTTATCATAGAGACGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCTGATTTTGGTGCATCAAGAATAATTTCAATTGAAGCAACTCACCTTACCACAATGGTTCAAGGTACTTTTGGATACTTAGATCCTGAATATTTTCACACTAGTCAATTTACTGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGTAAGAAGCCAATATCCTCTACAGAAAAATCTAAGGAATCACAAAGTTTAGCTTCCTATTTTGTTCAGTGTATGAAGGAGAATATGTTGTTTGACGTAATTGACAAAAGGATCACAGAAGGAGGGGAGAAAGAACATATCATTGTAGTTGCAAATCTTGCATTTAGATGCTTAGAAATGAGTGGAAGAAAACGACCAACGATGAAAGAAGTAACATTGGAATTAGAAGGGATCATGGGATTGAATAAGAAGCTTAATGCACAGCAAAATCACGAGGAAATTGAGCAGTACCAACATTACGATGGGTTTTCTACATCAAATTCATTACCAATTGACAGCAGCCAAACACACTCCACGGACTCGGAGGTTAAGCATATTCTTGCATTAGAATAG 2406 0.3865 MASACRIRNNARNLLKLVGEYGPRCKRELWRVQYALSRICNNERNLLTLDEKNPRWICNNERNLLTLDEKNPHWIFEDEALLMRIFQYGLLDETQNKLDYVLALTIQNFLERRLQILVFKSGMAKSIHHARVLIWQRHIGLLSSLNHLFCFSVTIISGPVLIMVLEKDNAIANWHALMGHTNASKAKITHPHSTSSKTVTLTDSPFLYSQAENTFLAVGCNSLAFLQSNGTTVGGCVSICDDNKNNSNNFNIDSNGCNGRYCCTTSLPSHLSEFNATIRGLSEHSSQGCGYALIARSYFMGDYETEKELKNKEYAPAMLEWEILNYMLTNSTFQLPPNCYDSNVTSLSNRNTGKQCRCSSWQQDDDFDSPFLDGDYYGNPYIAGGCKGPEYYFHKNNQWKKWVIVGISSSLGSLGFLIGLLFLYKVLKRRMIKKRKEKFFKRNGGLLLQKRMSSGEVNVDRTTLFTLKNLKKATDNFNKDRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGNVEEFINEFVILSQINNRNIVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDVRLRIASEVAGALFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSTEKSKESQSLASYFVQCMKENMLFDVIDKRITEGGEKEHIIVVANLAFRCLEMSGRKRPTMKEVTLELEGIMGLNKKLNAQQNHEEIEQYQHYDGFSTSNSLPIDSSQTHSTDSEVKHILALE 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1275g00001 801 ProSiteProfiles Protein kinase domain profile. 477 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00001 801 NCBIfam 30S ribosomal protein S4 15 141 IPR005710 GO:0003735|GO:0006412|GO:0015935
Vivi1275g00001 801 Pfam Protein kinase domain 477 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00001 801 SMART serkin_6 477 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1275g00001 801 Gene3D Phosphorylase Kinase; domain 1 448 550 - -
Vivi1275g00001 801 Gene3D Transferase(Phosphotransferase) domain 1 551 775 - -
Vivi1275g00001 801 SUPERFAMILY Nucleoside diphosphate kinase, NDK 154 193 IPR036850 -
Vivi1275g00001 801 SUPERFAMILY Alpha-L RNA-binding motif 7 139 - -
Vivi1275g00001 801 FunFam Wall-associated receptor kinase 2 551 769 - -
Vivi1275g00001 801 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 197 757 IPR045274 GO:0007166
Vivi1275g00001 801 FunFam Wall-associated receptor kinase 2 447 550 - -
Vivi1275g00001 801 SUPERFAMILY Protein kinase-like (PK-like) 462 746 IPR011009 -
Vivi1275g00001 801 ProSitePatterns Ribosomal protein S4 signature. 110 134 IPR018079 GO:0019843
Vivi1275g00001 801 CDD STKc_IRAK 483 749 - -
Vivi1275g00001 801 Pfam Wall-associated kinase 256 359 IPR013695 GO:0004674|GO:0016020
Vivi1275g00001 801 Gene3D - 105 214 IPR036850 -
Vivi1275g00001 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1275g00001 201 764 Receptor kinase-like Gene Family AT1G79680 45.104 3.44e-160 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi1275g00001 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1275g00001 - - vvo:131640934 1580.07