Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1273g00001 ATGAACAACACAACCGATTCATCTGGATTCTTTGGCTCAAATGACATAAGTGGATTTGGCTATGGCATAGGAATTTCAATTGGGATTCTTCTACTCATCACAACAATCACACTCACTTCTTACTTTTGTGCAAGATCACAAGTTCCAAATGCTCCTAGAAGAAACAACAACAACCACAACAACACCTCTGAATTTCTTGAGCCACAACATTCAATAATTAATTTTGGATTAGATGAAGAAACAATCATGAGTTATCCAAAGATGTTGTATTCTGAAGTGAAGCTTAGAAAAAATGATTCAACTTCAACTTGTTGTTCTATATGTTTGGGTGATTACAAAGGAAGTGACATGCTTAAGGTTTTGCCTGATTGTGAACATTTGTTTCATCTCAAGTGTATAGAACCTTGGTTAAGGTTGCATCCTACTTGTCCTCTTTGTAGAACTTCTCCAATTCCAACACCTCTTTCAACACCTTTGGCTGAGGTTGTTCCATTAGCAACAAGGAGAGATTCATCATAG 519 0.3661 MNNTTDSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCARSQVPNAPRRNNNNHNNTSEFLEPQHSIINFGLDEETIMSYPKMLYSEVKLRKNDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIEPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRDSS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1273g00001 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 151 IPR013083 -
Vivi1273g00001 172 SMART ring_2 105 146 IPR001841 -
Vivi1273g00001 172 Pfam Ring finger domain 105 147 IPR001841 -
Vivi1273g00001 172 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vivi1273g00001 172 SUPERFAMILY RING/U-box 81 152 - -
Vivi1273g00001 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 161 IPR045899 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1273g00001 6 167 C3H Transcription Factor Family AT2G35910 60.494 6.21e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1273g00001 - - gmx:121172638 238.424