Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1272g00008 ATGATGTTGAATTCTGGAGAAGATGAACTGTATGAACAATTGTGGAAGGCTTGTGCTGGTCCTCATGTTGAAGTTCCTCGTGCTGGACAAAGGGTGTTCTATTTTCCTCAAGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAGAGGATTCCTTTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAGCAAGAAACAGATGAGGTTTATGCACAGATAACTTTGGTACCAGAATCTAATCAAACTGAGCCTACGAGCCTTGATCCTTGTCCTGCTGAGCCTCCGAAACCAAGAACTCACTCCTTCAGCAAGGTCTTGACTAATTCTGATACCAGTACTCATGGTGGCTTTTCTGTTCTTAGGAAGCACGCCACAGAATGTCTTCCGTCATTGGATATGTCACAATCTACTCCAACTCAGGAATTGGTTGCTAGAGATCTTCACAATTATGAATGGCACTTTAAGCATATCTTTAGAGGTCAACCACGTCGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTCGCTGGAGATACCTTCGTGTTTCTGAGAGGGGACAACGGGGAATTACGCGTTGGAGTGAGGCATCTGGCTTCTCCACAGAGCTGCATGCCTTCGTCTGTGATTTCCGGTCAGAGCATGCATATTGGTGTCCTTGCGACTGCGTCACACGCTGCTGCGACTCAAACTCTTTTTGTAGTATACTATAAGCCAAGGATGAGCCAGTTCATTATAAGTGTGAATAAGTATATCGAAGCTATGAACCAGAAATGTAGTGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGATGATGCCCCTGAAACCGACAAAAGATTTTCTGGCACAATAATTGGACAAGAGGATATATCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAGCCTGCATCTGTTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCGCTTATGGCTTCTGTTCCTTCATCGGTTCAACCTGCGGCTGTAAAATATAAAAGGCCTAGACTACCAAGTGAAATTCCAGATCTTGGAGACACGACATTATGTGATTCTACTTACTGGGAACCTGGGTTGACACAATCCGATGTAACGCAAGTTAACGTTATGTCTGAAACCAAAAGGACTGAAAGTGTGCATATGTGGCATCATAAGCAAAATGACAATAGCAGCTGCAATGGTATATCAAGGAATCCGACAGACGGAAGTTGGCTATCTTCTCCTCACTCCAGCGGTCCTTCTCATTTGTGTCAAGACATGACCGACACTAACAAGAGTGTCACCGTCTCAGCTTGGCCTAGTCTAAAAACTCACTCAGAAATATTGAACAAAAATGATAATTTGATTGACCAAGTTGACAAGGAGAACAAAATAGAAACTCCTACAAGCTGTAGATTGTTCGGGATTGATCTTAATGATCCTCGCACAAATTCTCCGAATGCATCTGGAGTCACCTTTGAGAGATGCGTTGTCACTCCCGTGTCAAGAATTGAGGCTGACCAAAATATGTTTGATATCTCAAAGACTTCAAAAGAAAGGAAACAAGAACCATCTCCAATCGAAACACTAAGCAAGCAAATCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGTACTTGACTGCGTTGGATGGCTATGATCAACTCATTGATGAATTGGAGAAGCTTTTTGACATAAAGGGACAGCTCCAACCGAGGAATAAGTGGGAAATCGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCGTGGCCGGAATTCTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAAGATATGCACAAAATGAGCTCAGGGAACAAATTACCAATCTCATCAATGGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACATGA 2007 0.4285 MMLNSGEDELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAEPPKPRTHSFSKVLTNSDTSTHGGFSVLRKHATECLPSLDMSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRHLASPQSCMPSSVISGQSMHIGVLATASHAAATQTLFVVYYKPRMSQFIISVNKYIEAMNQKCSVGMRFKMSFDGDDAPETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDEPASVPRPDRISPWEIEPLMASVPSSVQPAAVKYKRPRLPSEIPDLGDTTLCDSTYWEPGLTQSDVTQVNVMSETKRTESVHMWHHKQNDNSSCNGISRNPTDGSWLSSPHSSGPSHLCQDMTDTNKSVTVSAWPSLKTHSEILNKNDNLIDQVDKENKIETPTSCRLFGIDLNDPRTNSPNASGVTFERCVVTPVSRIEADQNMFDISKTSKERKQEPSPIETLSKQINSRSCTKVQMQGVAVGRAVYLTALDGYDQLIDELEKLFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDMHKMSSGNKLPISSMEETVISSDTAET 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1272g00008 668 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Vivi1272g00008 668 SUPERFAMILY CAD & PB1 domains 556 634 - -
Vivi1272g00008 668 CDD B3_DNA 113 214 IPR003340 GO:0003677
Vivi1272g00008 668 MobiDBLite consensus disorder prediction 413 445 - -
Vivi1272g00008 668 FunFam Auxin response factor 276 349 - -
Vivi1272g00008 668 Pfam AUX/IAA family 537 643 IPR033389 -
Vivi1272g00008 668 FunFam Auxin response factor 553 646 - -
Vivi1272g00008 668 Gene3D - 553 646 - -
Vivi1272g00008 668 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 646 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1272g00008 668 ProSiteProfiles PB1 domain profile. 558 639 IPR000270 GO:0005515
Vivi1272g00008 668 SUPERFAMILY DNA-binding pseudobarrel domain 102 244 IPR015300 -
Vivi1272g00008 668 Pfam B3 DNA binding domain 115 214 IPR003340 GO:0003677
Vivi1272g00008 668 Gene3D - 276 350 - -
Vivi1272g00008 668 Gene3D - 112 216 IPR015300 -
Vivi1272g00008 668 FunFam Auxin response factor 113 217 - -
Vivi1272g00008 668 SMART B3_2 115 217 IPR003340 GO:0003677
Vivi1272g00008 668 Pfam Auxin response factor 241 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1272g00008 668 MobiDBLite consensus disorder prediction 93 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1272g00008 2 651 B3 DNA Binding Superfamily AT4G23980 57.511 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1272g00008 AUX_IAA 5.2e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1272g00008 K14486 - gmx:100799088 969.918