Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1272g00005 ATGGGACGTGTTATTAGGGCTCAACGAAAGGGAGCTGCTGGTTCCGTTTCCAAATCCCACACTCATCACCGGAAAGGACCAGCACATAACGGTTACCTCAAGGGAGTGGTGACCGACGTTATCCACGATCCAGGTCGTGGTGCTCCTCTGGCCAAGGTTACCTTCCGCCATCCTTTCCGTTACAAGAAGCAGAATGAACTTTTTGTTGCCGCGGAAGGTTTATACACTGGGCAAATCATCTACTTCTGTAAAAAAGCCACCCTAGCCGTTGGTAACGTGCTTCCTCTGAGATATACCTCAGAGGGAGCCGTTATCTGCAATGTTGTTATCAGTGACAACCTTGATAACAACACAGCTAGGATCAAGCTTCCTTCTGGTTCAATAAAGATTGTGTCGAGAAACTGCTGGCCTAAGGTTCGTGATGTTGCGATGAATCCAGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCATATTGGTCATGCAAGTACTGTCAGACGTGATGCACCTCCTCGACAGATGATTGGTCTCCTTGGTTTGAAGAAGATTGGTCGGTTTAGAGGACATGCTGCTGCAAGTGCTGCTAAGGGTGATAAGTAA 600 0.485 MGRVIRAQRKGAAGSVSKSHTHHRKGPAHNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQIIYFCKKATLAVGNVLPLRYTSEGAVICNVVISDNLDNNTARIKLPSGSIKIVSRNCWPKVRDVAMNPVEHPHGGGNHQHIGHASTVRRDAPPRQMIGLLGLKKIGRFRGHAAASAAKGDK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1272g00005 199 SMART Ribosomal_L2_2 11 82 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi1272g00005 199 FunFam 60S ribosomal protein L2 1 78 - -
Vivi1272g00005 199 Pfam Ribosomal Proteins L2, C-terminal domain 133 167 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi1272g00005 199 SUPERFAMILY Nucleic acid-binding proteins 2 89 IPR012340 -
Vivi1272g00005 199 PANTHER RIBOSOMAL PROTEIN L2 2 133 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi1272g00005 199 Pfam Ribosomal Proteins L2, RNA binding domain 30 81 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vivi1272g00005 199 Gene3D - 1 78 IPR012340 -
Vivi1272g00005 199 SUPERFAMILY Translation proteins SH3-like domain 91 186 IPR008991 -
Vivi1272g00005 199 MobiDBLite consensus disorder prediction 1 29 - -
Vivi1272g00005 199 Gene3D Ribosomal protein L2, domain 3 123 187 IPR014726 -
Vivi1272g00005 199 SMART Ribosomal_L2_C_2 88 171 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1272g00005 1 198 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 60.618 1.47e-98 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1272g00005 K02938 - gmx:547677 303.138