Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi126g00022 ATGGCTTTACTGTGCGGTTCACCATCGGTTTCCTTCCCTTCATCTTCATTCACGTCTCACAAAATTGCAACCGCTAAATCTTCCTTTGTTGGCTCCCAATTGCCTCTTCCAACCCTCTCATTATCGTCTTCTTCTATTCGTAGCACCCATTTCTCTCCATCTTTCGTTGTTCGTTCTCAACTGGAAAATTCCGTGGTTGAACAAGATCCACGATTCATCACTGTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACGACGTGGTATCCAAAAGCTTCGGACCATGTCAACACAGAAAAAACATGGTATATTGTTGATGCTGAAGATAAAATTCTAGGAAGACTAGCATCAACAATTGCCAATTACATTCGAGGCAAAAATCTAGGGACTTTTACACCCAGTGTTGACATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTAAGTGGGAAAAAGAGGACACAAAAGCTTTATCGGAGGCACTCAGGTCGACCTGGTGGTATGACAATTGAGACATTTGATCAGCTGCAGAAAAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGACTCTATTCACACGGCTGAAGGTTTATAGCGGCCCAGATCATCCACATGAGGCGCAGCAGCCGATTGATTTGCCAATTAGGGATAAGAGAATACAGTTGCAGAGATAA 726 0.438 MALLCGSPSVSFPSSSFTSHKIATAKSSFVGSQLPLPTLSLSSSSIRSTHFSPSFVVRSQLENSVVEQDPRFITVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDAEDKILGRLASTIANYIRGKNLGTFTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTIETFDQLQKRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEAQQPIDLPIRDKRIQLQR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi126g00022 241 FunFam 50S ribosomal protein L13 89 232 - -
Vivi126g00022 241 CDD Ribosomal_L13 105 218 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 PANTHER RIBOSOMAL PROTEIN L13 91 236 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 SUPERFAMILY Ribosomal protein L13 100 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 NCBIfam 50S ribosomal protein L13 99 230 IPR005823 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 Hamap 50S ribosomal protein L13 [rplM]. 105 240 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 Pfam Ribosomal protein L13 103 221 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 Gene3D Ribosomal protein L13 94 237 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi126g00022 241 ProSitePatterns Ribosomal protein L13 signature. 195 217 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi126g00022 107 240 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.412 4.58e-08 50.1