Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi126g00021 ATGATGTATGAAGTGATCCTAACTGGTTCTAGCGACGGTTCCATGATAGCATTTGAGGCTTCCACAGGCGCTATTCTTGCTCAGTTCAGAGGCAGTCGATCACCTTGTCGTGGCTTCACGGTGACATGCAAAGAACTCATTGTAACCTCTCATGTGTCTTCAGACAATGGTTCAGGCTTAATCCACATCTACAATTGGGATACTTCAACAGTGTTCCATAAGATCCCTCTCCCTGAAGCCGTCACTCCACTTATAGCCGATTCGGGTGGTGATTTTATCTTTGCAGGTGGAGTGGCGGGGAGTATACATTCCTTGTCACTTCCTTCCGGAGATATCATCAAATCAATTACACCTTACTCGAAACCTGTTTCTAGTCTCCACCTCAATAATGATGGGTCACTACTGATTTCAGGTTACAATGATGGTTCTATTGTTGTAATCCCATCTTTTATGCTTGTTAATGGTTCATATTCTTGTAATGACCCAATCTCACACAAATGGAAGGCACATTCTGATGCAGTGACAAGTTTCAACACTGGAATTGGGATTCATACTTGTACATTTATTTCATGTTCGATGGACTGCACCTGTAAGTTTTGGGGTTTATCAAATGGGATAACTCTAATTCGAACTGTGACATTTCCATGTTCTATTTTTGGGTTTGTTATGGATTCAACAGAGTCGGGTTTCTATGCTGCTGGTTCAGATGGGTTTATATATAAAGGGTTAATGAAGGCTGGGAGTATAAAAATGTTAGAAAAAGGTTATGAATTGGTTAATTGGGGTAGTAAAACAAAAAACCATGATGGGTCAATAATGTCCTTAGTTTTGGTGAATAATGGGAGAAATTTGGTGTCTGCTTCAAAAAATGGAAGTGTTTGGATGTGGGATGTTGAGGAAGGTGAAGTCATTATGGTTTTAGGAAATGCTCAAATATTGGGAAGCATTAGTGATATGATAGTGGTCAAAGGGACTAATATTATAGAGAGAAATGAGGGTGGTGAAGGTGCTAATAGTGGCTTAATTAGTTCTTCTAGATTATGTGATGAAGAAATGATTAGGACTTGGATGAAAATTAGTGAGCTTGAAAATGTGATGGATGAGGCAATTCATGACCAAGGAAGTGCCATAGATATGCTTGAATCTACAATTGCATCTTATGAGAGGCTATTGAAGCTTATTCTTAGGGAAGTTACCAAAGCCATTGAAGAGGCAGATCATGAAGATGAAGACAATAATAATAAAGGGGAAAAAGATTAA 1260 0.3897 MMYEVILTGSSDGSMIAFEASTGAILAQFRGSRSPCRGFTVTCKELIVTSHVSSDNGSGLIHIYNWDTSTVFHKIPLPEAVTPLIADSGGDFIFAGGVAGSIHSLSLPSGDIIKSITPYSKPVSSLHLNNDGSLLISGYNDGSIVVIPSFMLVNGSYSCNDPISHKWKAHSDAVTSFNTGIGIHTCTFISCSMDCTCKFWGLSNGITLIRTVTFPCSIFGFVMDSTESGFYAAGSDGFIYKGLMKAGSIKMLEKGYELVNWGSKTKNHDGSIMSLVLVNNGRNLVSASKNGSVWMWDVEEGEVIMVLGNAQILGSISDMIVVKGTNIIERNEGGEGANSGLISSSRLCDEEMIRTWMKISELENVMDEAIHDQGSAIDMLESTIASYERLLKLILREVTKAIEEADHEDEDNNNKGEKD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi126g00021 419 Gene3D - 157 318 IPR015943 GO:0005515
Vivi126g00021 419 Gene3D - 3 146 IPR015943 GO:0005515
Vivi126g00021 419 PANTHER WD-REPEAT PROTEIN 18 2 366 IPR045227 -
Vivi126g00021 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Vivi126g00021 419 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
Vivi126g00021 419 Coils Coil 377 404 - -
Vivi126g00021 419 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 302 IPR011047 -
Vivi126g00021 419 SMART WD40_4 22 65 IPR001680 GO:0005515
Vivi126g00021 419 SMART WD40_4 255 297 IPR001680 GO:0005515
Vivi126g00021 419 SMART WD40_4 160 201 IPR001680 GO:0005515
Vivi126g00021 419 SMART WD40_4 109 148 IPR001680 GO:0005515
Vivi126g00021 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 302 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi126g00021 91 300 U-box Gene Family AT1G04510 26.147 3.65e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi126g00021 K14829 - gmx:100785191 421.394