Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1266g00007 ATGAGATTGAAGAAGAACAACATGGGAAGAAGAAACGGTGGCGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGAAGATCTCTGCAATTCGCTCTTCGCCGTCGAGTTGAACTCTGCAAATCAAAGTACAAAACCGCCGAAGAAATTGTCGATCATCTTCGCTCCAATTACCCTGATTATCACCGAACTAAGTCTCAAACCCTAATTCGATTTGTTGAAGACGCTCTTCAACATTCCAACAATACTCCCACACGGAACCACAATTCAATCAACAATGCCGCCGACGCCGACGAGGATGATGAGAATGAGAATGAGAATCGAAGTGCTTCTCGAAAGAGACGAAAGGAAAGTAAGGATGAATCTGAGGATAGATTGCAAAAGATGGAAGCGCTTCACATTAAAGCACGGATGAGTAAACAGGCTCCATCAACTTCCTCTTCCTCCGATTCTGCTTCGGCTAGCGATGATGATGAAGAAGGAGCCGTTTCGACTTCGGAGGACGGGATCTATAGTGAGAAAGTTGAACCTGCTTTTGACTTGATGAAGGATATGCTGCGACATTCCTATACTGGAGCAACAAAATCAAAGTCAGTATCCGAGGTGGAAGAAAAAGAAAAAGAAAAGAATGTGGAATTGGATATTGGAAATTCGAGTAAGGCTACTATTACTGTCAATGTGGATGATGGTAAATCCAAATCGATATCGACAACAGGGAAGCACTCGAAGGGTTCGGTTTCGAATACCGGTGGTGGAGGTGGTGGTGATGTTGAGGTGAAAGGGAAAGAGGGGCCGAAGTTTAAGGATTTGGGTGGGATGAAGGCTATTTTAGAAGAGTTGATGATGGATATTGTGTCGTTGTGTAATCCTCAGTTGCCTAGACATTTAGGGGTGAGACCAGTTACTGGAATTTTGTTGCATGGACCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATAGCGAATGAAACTGGTCTTCCTTTTCATCATATTTCGGCTACGGAGGTGGTTTCTGGAGTCTCAGGTGCATCTGAAGAATATATTAGAGAGCTTTTCGATAAAGCAAAAAGGACTGCTCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTGACCCAGTTAATGACTTCCATGGATGAACCAGAGAGTTCTGAGGAACCTCGTGGCTATGTTCTTGTAATTGGGGCCACAAATAGACCTGATTCTCTTGACCCTGCTCTTAGACGGCCTGGTCGGTTTGATCGTGAGTTTCTTGTTGGTGTTCCGGATGAATCTGCCAGGGTGGAGATCCTTTCCGTGGTTACTCGCAATCTTAAACTTGATGGTTCGTTTGATCTGCACAAAATAGCCAGGTCCACGCCAGGATTTGTCGGTGCTGATTTGACTGCTTTGGCTAACAAAGCTGGTAATTTAGCAATGAAGAGGATACTTAATGAAAGGAAGCGTGAATTATCTCAAGATATCACAGATGAGGATACTCAAGAATGGTGGAAAGAACCTTGGTTGCCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAGCCTTCAGCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTTAAATGGGAAGATGTTGGCGGGCTTGATTTATTAAGGCATGAGTTTGATCGCTATATTGTAAAGCGTATTAAATATCCTGAGTTGTATGAGGGAATTGGGATGAATCTCGAGTCTGGATTTTTACTATATGGACCTCCAGGATGTGGTAAAACACTTATTGCCAAGGCTGTTGCCAATGAGGCGGGAGCTAATTTCATTCATATTAAGGGACCCGAACTTCTAAATAAGTATGTCGGGGAAAGCGAGCTTGCGGTGCGGACATTGTTTAGTCGTGCAAGGACTTGTGCACCATGTGTTCTATTTTTTGATGAGGTTGATGCTCTGACTACCGAACGCGGTAAAGAAGGTGGATGGGTTATTGAAAGACTATTGAACCAGTTGCTTATTGAGTTAGATGGTGCTGAGAATCGGAGAGGTGTATTTGTGATTGGTGCAACAAATAGGCCCGAGGTGATGGACCGCGCTCTCTTGCGGCCTGGTAGGTTCGGTAAACTGCTTTATGTTCCTCTTCCAAGCTCAGATGACCGTGTTTTGATATTGAAAGCTCTTGCAAGGAATAAACCTATTGATTCTAGTGTGGATTTGAGTGCCATTGGAAGAATGGAATCATGTGAAAACCTTAGTGGTGCCGATCTTGCCCAATTGATGGGTGAAGCAGTAATGGCTGCTCTTGATGAGAAATTGAGCTCAACTGAGACAACCTCATTGATCATTAAGGCAAGTCATTTTGAGCTAGCACTAAGTAAAGCTTCTCCGTCTGTGTCGGACAAGCAAAGACAGTACTATGAGCGTTTGTCAAAGAGCCTAAGAGCAGCATGA 2481 0.4393 MRLKKNNMGRRNGGGGGGGGGGGGGRSLQFALRRRVELCKSKYKTAEEIVDHLRSNYPDYHRTKSQTLIRFVEDALQHSNNTPTRNHNSINNAADADEDDENENENRSASRKRRKESKDESEDRLQKMEALHIKARMSKQAPSTSSSSDSASASDDDEEGAVSTSEDGIYSEKVEPAFDLMKDMLRHSYTGATKSKSVSEVEEKEKEKNVELDIGNSSKATITVNVDDGKSKSISTTGKHSKGSVSNTGGGGGGDVEVKGKEGPKFKDLGGMKAILEELMMDIVSLCNPQLPRHLGVRPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSEEPRGYVLVIGATNRPDSLDPALRRPGRFDREFLVGVPDESARVEILSVVTRNLKLDGSFDLHKIARSTPGFVGADLTALANKAGNLAMKRILNERKRELSQDITDEDTQEWWKEPWLPEEINKLAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDLLRHEFDRYIVKRIKYPELYEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAENRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSSDDRVLILKALARNKPIDSSVDLSAIGRMESCENLSGADLAQLMGEAVMAALDEKLSSTETTSLIIKASHFELALSKASPSVSDKQRQYYERLSKSLRAA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1266g00007 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 821 IPR027417 -
Vivi1266g00007 826 Gene3D - 552 817 IPR027417 -
Vivi1266g00007 826 PANTHER AAA-FAMILY ATPASE 116 823 - -
Vivi1266g00007 826 SMART AAA_5 590 726 IPR003593 GO:0016887
Vivi1266g00007 826 SMART AAA_5 299 439 IPR003593 GO:0016887
Vivi1266g00007 826 MobiDBLite consensus disorder prediction 1 27 - -
Vivi1266g00007 826 ProSitePatterns AAA-protein family signature. 407 425 IPR003960 GO:0005524|GO:0016887
Vivi1266g00007 826 MobiDBLite consensus disorder prediction 229 262 - -
Vivi1266g00007 826 Gene3D - 255 436 IPR027417 -
Vivi1266g00007 826 MobiDBLite consensus disorder prediction 229 248 - -
Vivi1266g00007 826 FunFam ATPase, AAA family protein 552 744 - -
Vivi1266g00007 826 MobiDBLite consensus disorder prediction 104 134 - -
Vivi1266g00007 826 MobiDBLite consensus disorder prediction 79 170 - -
Vivi1266g00007 826 Pfam ATPase family associated with various cellular activities (AAA) 595 723 IPR003959 GO:0005524|GO:0016887
Vivi1266g00007 826 Pfam ATPase family associated with various cellular activities (AAA) 303 436 IPR003959 GO:0005524|GO:0016887
Vivi1266g00007 826 Coils Coil 111 131 - -
Vivi1266g00007 826 FunFam Cell division control protein 48 homolog C 438 546 - -
Vivi1266g00007 826 Gene3D - 725 802 - -
Vivi1266g00007 826 Gene3D - 438 546 - -
Vivi1266g00007 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 544 IPR027417 -
Vivi1266g00007 826 ProSitePatterns AAA-protein family signature. 694 712 IPR003960 GO:0005524|GO:0016887
Vivi1266g00007 826 FunFam Ribosome biogenesis ATPase RIX7 255 436 - -
Vivi1266g00007 826 Pfam AAA+ lid domain 746 786 IPR041569 -
Vivi1266g00007 826 Pfam AAA+ lid domain 460 508 IPR041569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1266g00007 523 807 Calmodulin-binding Proteins AT3G56690 44.948 1.28e-68 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1266g00007 K14571 - gmx:100809594 1055.05