Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1266g00001 ATGAATTTTGTTCTTGTTTTTCCTTTCTTTCTATGTCTCAACATCATGATGAGTTTGATGAGTGTCTCATCAGCTCCTACTCCTTCTCCATCATCATCATCATCATCTTCATCATCACCATGTCCTATGGATCTTAACTATGTCCTAAGAATCCATTGGAACTCTTCTTCTTGTCAAAACCTGAAGCCTCTAGAATCAAACACAAGCAACTGTTGCATATCACTTTTGTCTCTCTTTGGAATAGGCTTGGCCCAACATCTCAAAGAAACCTCACAGTTCAATCTACAAGACCTTCAAACTTCACTTTCATGCATGAAAGATTTTCAAACAAAGCTCAATTCTTTATCACTTTCAAACACCCTAGTCAACTCTTGCTTCGACCCTCTTCAGTTTGTTATCTCACCTCACATATGTGCAGGGATTGAAACTGTCCATGATTGGAATCAGAAGTTGGGTCAGAACACCACTCTCAGCACTGCTTGTAAGCCAGATCTGACTGATCTCTCTCAGTGTGATGTTTGTTTGGCTGCTGGTTTACAGGTTAAGCAGAAGCTTGTTTCGATTGATGGTAATTCTTCTCACTCGTTGGATTGTTTCTACTTTGCTATTCTTTATGCTGCTGGGATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTTTACCTGTTTATTCGCAAACTGGTTCGGGTTCGAAGAGTCGTCAGGGGCTGGTGTTCGGGTTAACCGGAGCTGGCGTTGCGTTGTTTGTTATGAGTTCTTTGTTGGGTTTATATGTTTGGTATGATAGGAAACGTGTGAAGGAGAGGAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAGCAAGGGTCTAGAAGAAGGTTGAGGCCGAATACCGGGTCGATTTGGTACAAAATTCAGGAACTTGAGAAGGCTACTGATAACTTTTCATCCAAGAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCGGTTAAGCGGGTTTTGGAATCGGATTTTCAAGGCGATGCCGAGTTTTGTAATGAGGTTGAGATTATTAGTAATCTCAAGCATAGGAATTTGTTGCCTCTTAGAGGCTGTTGTGTGGTTGATGAGAGTGAGAATTATGGGGATAGAGGAAGTCAAAGGTATCTTGTTTACGATTACATGCCGAATGGAAACCTCGAAGATCATCTTTTTGTGTCGAAGGATTCTTCGAAACCGAACAAATCGTTGACTTGGCCTCTAAGGAAGAACATAATCTTGGATGTGGCAAAAGGGTTGGCTTATTTGCATTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCTACTAATATTCTTCTTGATGAAGATATGAGGGCTAGAGTTGCTGATTTCGGACTCGCGAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGGGTGGCGGGGACTCACGGTTATTTAGCGCCGGAGTACGCGCTTTATGGTCAACTGACCGAGAAGAGTGATGTGTATAGCTTTGGCGTCGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTCGATTTGTCTTCGTCAGGATCGCCACGGGCGTTCTTGATTACGGATTGGGCTTGGTCGTTGGTGAAATCGGGGAAAATAGACCAGGCTTTGGATGGTTCTCTCTTGAAAGACGAAAACAATACTAGTTCGAATCCGAAGAGCATAATGGAAAGGTTTTTGCTGGTTGGAATTCTGTGTTCTCATGTAATGGTCGCTTTGAGACCGACGATTTCAGACGCTTTGAAGATGTTGGAAGGCGATATCGAAGTTCCTCAAATTCCAGACAGGCCTATGCCTCTTGGACATCCTTCGTTTTATAATAACGAATCCAACGGCAACACTTTTAGCATTTCTCCGGCGTTAAGCGGCCTCAAATTGCCCGCGGGAGACATGCTCAGGTCTATTAGTGAGAGATGA 1986 0.428 MNFVLVFPFFLCLNIMMSLMSVSSAPTPSPSSSSSSSSSPCPMDLNYVLRIHWNSSSCQNLKPLESNTSNCCISLLSLFGIGLAQHLKETSQFNLQDLQTSLSCMKDFQTKLNSLSLSNTLVNSCFDPLQFVISPHICAGIETVHDWNQKLGQNTTLSTACKPDLTDLSQCDVCLAAGLQVKQKLVSIDGNSSHSLDCFYFAILYAAGIVNEFGPESNGAVTCAFSLPVYSQTGSGSKSRQGLVFGLTGAGVALFVMSSLLGLYVWYDRKRVKERKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDESENYGDRGSQRYLVYDYMPNGNLEDHLFVSKDSSKPNKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDQALDGSLLKDENNTSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPSFYNNESNGNTFSISPALSGLKLPAGDMLRSISER 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1266g00001 661 PANTHER OS01G0750732 PROTEIN 63 615 - -
Vivi1266g00001 661 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Vivi1266g00001 661 ProSiteProfiles Protein kinase domain profile. 316 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1266g00001 661 Pfam SPARK 36 199 IPR043891 -
Vivi1266g00001 661 SMART serkin_6 316 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1266g00001 661 Gene3D Transferase(Phosphotransferase) domain 1 401 615 - -
Vivi1266g00001 661 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 401 615 - -
Vivi1266g00001 661 FunFam probable receptor-like protein kinase At1g11050 279 400 - -
Vivi1266g00001 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vivi1266g00001 661 Gene3D Phosphorylase Kinase; domain 1 287 400 - -
Vivi1266g00001 661 Pfam Protein kinase domain 318 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1266g00001 661 SUPERFAMILY Protein kinase-like (PK-like) 297 608 IPR011009 -
Vivi1266g00001 661 CDD STKc_IRAK 322 609 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1266g00001 34 656 Receptor kinase-like Gene Family AT1G11050 64.423 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi1266g00001 Pkinase 5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1266g00001 - - gmx:100806560 1032.71