Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1260g00005 ATGGGAGAAGAAGCTGTTTGTTTGCAAGCATTGGAAGATGGAAGAACGGAAAATATTGAGGTTCCGAAGTCGGAACTGAAACGTGTTGCTGATACTGAACCACCAAATGTTTCTCCGAATAAAAAACAAGCAAAAGAGGTTTCTAATGACGAAGTGCGTTCTGAAGTTTCGAATCCCAATGTTTCTGCAACGGAACACGCGCTAACCTTTCATGATATTAGTAGCCAACCCACGGAAACGGAAAACATCAACCATGCAGAATGCGGTGAATTAACGTCTACTTGTTTGGAGAATTCTAGTTCTCATGATACTCTTAGTGATGAGGCCGTTGATAGGAATCATGATAATAACAATAATACTTCTCTGTATGATAAAAGCACTAGTAGTAAGGATGCAGTGATGTCCCGTGTTGTGATGGAAATTCCTAAGCATGTTAGTTCAACTGGAATTAGGAAAATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTGTCAAACACCTGCGGGCTATACTGATGGATATGGCAATGGCTATCACGGGGATGATGAATATTTGGCAAAGGATGATTATAATAGTGGCTTGTTAGAGACCTCATATGGCATGCAATATGTTCCTGATGGATATTTGGAATCATATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTTCCTAACTGCTTCCCTACAAATGTCAAAAAGCTCTTATCAACTGGTATCCTTGATGGAGCTGCAGTGAAATATATTTACAACCCTGGAAAGGTTGAGCTAGAAGGGATTATCGGTAGCGGTGGGTATTTGTGTGGCTGTTCAATGTGCAGTTACTCCAGAGTGCTCAGTGCCTATGAGTTCGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCTCCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCCGGTTCATCTATCAACGAGGAAACCTTCCAGGTTTGGAAAGAAAGTCTTCTAGAAAGCAACAGAAAGGTTCCAACTCATAAAAATTACAATACAAAGTTTACTGGCATGCCTCATTCAAACAACAGTCAATCTACAGAAAGTGAAAGCCCTTTCTTTTCTTCGCGTGTACGGAATCATTTTGAACAGCACATGTATGTGAACCAGACATCTGATGAGTGGAAACGCGTGGTGAAGAAGCCAAGCACCTACACTTATCCCTCAGGTATACTGCAGAAGAGAAGTACTGATGGTTGCACTAAGAAAAGGGATAATGATTTACACAGGTTACTTTTTCTGCCTAATGGCCTACCAGATGGTGCTGAGTTGGCCTACTACGTCAAAGGACAGAGATTACTTGGAGGTTACAAACAAGGAAGTGGTATAGTATGCAGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGCCACATATATACTTCCAACGGATTAACGCTTCACGATATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACTACGGGAGATAGTGACGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCCTTTCATGCAGCCTGCTTGGGTTTACACACTGTACCCGCTAGTGGTTGGCATTGTCTAAATTGTAAAGATAATACTGATGATGAAAGAGGTGTGAGACCCATCATGATACGGTTGACACGAGTTGATAAAGAACCAGAATATGAAATGGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAAGAAAAGTGGTTTTGTTGTGATGACTGCAGTCGAATATATGTGGCTCTACAGACTTCAGTTTCTGCAGGAGCAGATACTATACCCACACCCTTGTCTGAGCTAATAATCAGGAAGCACAAGGAGAGGGGGTTGTGTACATATGGATTCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAGCATTTACCGTTACTTTCTCGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCTATTGTCGCAATATCTGGCCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTCAGGATTTTTGGCCGCAATATTGCTGAGCTTCCCCTGGTAGCTACAAGTAGAGAGTATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGCATAGAGAGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTTCTCCCTGCTGCAGGGGATGCAGAGTCAATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTAACCAAATATCTTAGAGAGGTGCAGCTCACCCTCTTCAACAAAACTTCAGTGCTGGAGAAGACTGTGCAGCTTGTGACAGAATGA 2628 0.4098 MGEEAVCLQALEDGRTENIEVPKSELKRVADTEPPNVSPNKKQAKEVSNDEVRSEVSNPNVSATEHALTFHDISSQPTETENINHAECGELTSTCLENSSSHDTLSDEAVDRNHDNNNNTSLYDKSTSSKDAVMSRVVMEIPKHVSSTGIRKITFKFSKKKEDYDCQTPAGYTDGYGNGYHGDDEYLAKDDYNSGLLETSYGMQYVPDGYLESYSGNMELKMSKKVVPNCFPTNVKKLLSTGILDGAAVKYIYNPGKVELEGIIGSGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTAPNSMPDEIIKNVAGSSINEETFQVWKESLLESNRKVPTHKNYNTKFTGMPHSNNSQSTESESPFFSSRVRNHFEQHMYVNQTSDEWKRVVKKPSTYTYPSGILQKRSTDGCTKKRDNDLHRLLFLPNGLPDGAELAYYVKGQRLLGGYKQGSGIVCSCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLHTVPASGWHCLNCKDNTDDERGVRPIMIRLTRVDKEPEYEMGGCVVCRENDFSVDKFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKEKWFCCDDCSRIYVALQTSVSAGADTIPTPLSELIIRKHKERGLCTYGFMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREYQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLTKYLREVQLTLFNKTSVLEKTVQLVTE 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1260g00005 875 FunFam PHD finger family protein 702 869 - -
Vivi1260g00005 875 MobiDBLite consensus disorder prediction 97 128 - -
Vivi1260g00005 875 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 759 845 IPR016181 -
Vivi1260g00005 875 SMART PHD_3 603 660 IPR001965 -
Vivi1260g00005 875 SMART PHD_3 533 574 IPR001965 -
Vivi1260g00005 875 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 521 596 - -
Vivi1260g00005 875 SUPERFAMILY FYVE/PHD zinc finger 599 656 IPR011011 -
Vivi1260g00005 875 ProSitePatterns Zinc finger PHD-type signature. 604 659 IPR019786 -
Vivi1260g00005 875 PANTHER AUTOIMMUNE REGULATOR 31 869 - -
Vivi1260g00005 875 ProSiteProfiles Zinc finger PHD-type profile. 601 662 IPR019787 -
Vivi1260g00005 875 Gene3D - 701 868 - -
Vivi1260g00005 875 ProSiteProfiles Zinc finger PHD-type profile. 531 576 IPR019787 -
Vivi1260g00005 875 MobiDBLite consensus disorder prediction 16 60 - -
Vivi1260g00005 875 MobiDBLite consensus disorder prediction 360 383 - -
Vivi1260g00005 875 SUPERFAMILY FYVE/PHD zinc finger 529 576 IPR011011 -
Vivi1260g00005 875 CDD PHD1_AIRE 533 573 - -
Vivi1260g00005 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 662 IPR013083 -
Vivi1260g00005 875 MobiDBLite consensus disorder prediction 16 30 - -
Vivi1260g00005 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 591 IPR013083 -
Vivi1260g00005 875 Pfam Tify domain binding domain 262 313 IPR032308 -
Vivi1260g00005 875 Pfam Tify domain binding domain 467 516 IPR032308 -
Vivi1260g00005 875 FunFam PHD zinc finger protein 602 662 - -
Vivi1260g00005 875 Pfam PHD-finger 533 575 IPR019787 -
Vivi1260g00005 875 ProSitePatterns Zinc finger PHD-type signature. 534 573 IPR019786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1260g00005 1 875 PHD Transcription Factor Family AT3G53680 52.915 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1260g00005 TDBD 5.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1260g00005 - - tpra:123904992 1576.22