Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1258g00006 ATGGCAAAGCCTGATCAGGTGAGTCGAAACCAATTAAACAAGTTACTGTTAACGAGAATTGCAGCAGGTACTTCCTCAAGCTTCATGAGTGTGACCATGAGTCAAAGCAACAGCCATGATGCCATTAACAATGACAACAACAAGCCAGATGATCATGCTCACGACATTGTGATGCCTGGGTTTCGTTTCCACCCAACTGAAGAAGAACTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCCTTTCAATGTCGAGCTTATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGGGTTGGCAGCAATTGGTGAGAAGGAGTGGTACTTTTATGTGCCCCGAGATAGGAAGTATCGTAACGGTGATCGTCCAAATCGTGTTACACCTTCTGGGTATTGGAAAGCAACAGGAGCTGATAGGATGATTCGAACAGAGAACTTCCGTTCAATCGGGCTTAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCATCCGAACAAGTTGGATAATGAACGAGCATCGTTTGCCTCAACATGAAACTCAAAGATTAATTCACAAGGTTGAAATATCACTTTGCCGTGTTTACAAGAGAGCGGGTGTGGAAGACCATCCTCTTCCTCCCTCCATATCCTTCCCTCGTTGTCTCCCATCAAGCTCATCGTCAACAAGTTCATATTTGGACAAGAAACAACACCTGAACATGGCGTTTATGGGAATTAGTCATCTACAGCCACAGCCACAGCCACAGGTAATTGATGATCATATAGTTTATAAAATGAATGAAAGCGACCCAACTGTTATTCCAGGGCTAGTAGCTCCCATAGATCAGCAAGTACAACCTGCAGATCCTTCTGTGTGTGGTACTTTCATCCCAACCAGCAGTGTTATGGCAGATGATGATCTAAACATACTAACAAGTTATCAACAACAAAGCTATCCAAATAAGTTTTCTACTTTGCTCATGCAATCACCTACTCTGCCTCTAAACTTGCTCCCGAATTCGCTCACAACCATCTTCTCTGAGCGGCAGTGGGAATGGAATAACTATAACCCTATCCCTGAGGCTGCAAACAGAGAGCACAGTACGTAA 1113 0.4429 MAKPDQVSRNQLNKLLLTRIAAGTSSSFMSVTMSQSNSHDAINNDNNKPDDHAHDIVMPGFRFHPTEEELVEFYLRRKVEGKPFNVELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEHRLPQHETQRLIHKVEISLCRVYKRAGVEDHPLPPSISFPRCLPSSSSSTSSYLDKKQHLNMAFMGISHLQPQPQPQVIDDHIVYKMNESDPTVIPGLVAPIDQQVQPADPSVCGTFIPTSSVMADDDLNILTSYQQQSYPNKFSTLLMQSPTLPLNLLPNSLTTIFSERQWEWNNYNPIPEAANREHST 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1258g00006 370 FunFam NAC domain-containing protein 35 66 208 - -
Vivi1258g00006 370 ProSiteProfiles NAC domain profile. 57 205 IPR003441 GO:0003677|GO:0006355
Vivi1258g00006 370 Pfam No apical meristem (NAM) protein 59 183 IPR003441 GO:0003677|GO:0006355
Vivi1258g00006 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 56 268 - -
Vivi1258g00006 370 Gene3D NAC domain 66 208 IPR036093 GO:0003677|GO:0006355
Vivi1258g00006 370 SUPERFAMILY NAC domain 57 204 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1258g00006 56 238 NAC Transcription Factor Family AT2G02450 79.144 7.53e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1258g00006 NAM 8.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1258g00006 - - vvo:131641984 693.73