Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1255g00008 ATGCATATCTTCAAATCACCAACAATTATTACAACCCAATTGATTCTAGTTGCATCCTTGTTAGCTTCACTTCCATTTCCATTTGAAGCTTCTCCAATATTCAACTCATTCGCCTGCACAGACACCTCTTATTACAAACCCAATTCAAATTTCCAAACCGCTTTAAAAACTCTTCTCTCTTCCCTCATCTCAAACTCCACCCTCCATAACGGTTTCTACACCGTCCATATCCCTCTCTTCAATTCCCCCAACGACTTGAAAGGACTCTTCCTCTGCCGCGCCGACATCACTCCCTCCCTCTGTCAACGCTGTGTAACAGCAGCAGCTAATAACATCACGACTTTATGTAACAACCAGACAGAATCTATCATCTGGTACGATGAATGCTTTCTGCGTTATTCCAATAATTCATTCTTGAATCAAATGGTTCCAGCAACGGACTTAGAATCAGATGAGAGTGTCCCTGATACAGAAGCTTCCCAGTTCAGTGTTTTTCTTGCAAGTCTTTTGAAGGATTTAGCATATGAAGCTGTGAATTCTCCTTCGGGTCAAAAATTTGCTGCAAAAGAAGAAAAATTCTTAGCTTCTTCGGTATATTCTTTGGCAGAGTGTACACCTGATTTATCTACTTTTGACTGTAACACGTGTTTGCAAGGTGCTATTAGTTCTATTGGAAATTGTTGTGATGGGGAAAGAGGTGCCAGATCACTTCTTCCGAGTTGTAATATTCGATATGAATTTTACCCTTTTTACAATGTTTCTGCTGTTTCTACTCAGCCACAACTTCCTCCTCCTTCATCAGGAAAGAGCAATGTTGCTATGATTATTGGGATTGTTGTCGCAATTGTTGGTGCTGTGGCACTTTTGATTATTGGCTGCTATTTCCTGCGTAAGAGGGAGAGGAAGAAGTATAAGTATAATAGTACATTCATCCAGGGTTCATCTTCAATTCGGAGGGAGGAACTTACTGATATAGAGTGTTTGCAATTTGACTTTGCCACAATTGAAGCTGCCACAAATTGTTTCTCGGACGAGAACAAGATTGGTCAAGGTGGTTTTGGTGTGGTTTATAAGGGTATTCTTCCCGACGGGCATGAGATAGCTGTGAAGAGGTTGGCGGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAAGAATGAAGCTTCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGGATGTTCGGATTTTGTTTGGAGGGGAGGGAGAAGATTCTTGTCTATGAATACATACCAAATAAAAGCCTTGATCACTTTCTATTCGATCCTGCTAAGCAAAGGGAGTTAGATTGGTCAAAACGCTACAAGATTATAGTTGGAATTGCTCGAGGGATTCTTTATCTCCATGAAGACTCCCAGCTTAGAATTATTCATCGTGATCTCAAAGCTAGCAATGTTCTATTAGATGAAAATATGAACGCAAAGATTTCAGATTTTGGGATGGCAAGAATTTTCCAAGGAGATCAGACTCAAGTAAATACAGGACGGATAGTTGGGACTTATGGCTACATGTCTCCAGAATATGCAATGCGTGGACAATTTTCTGTGAAGTCAGATGTGTTCAGCTTCGGTGTCTTAGTTTTGGAAATTGTAAGTGGCAAAAAGAATACGGATCTAAATCAATGGAATGATGCTGATGACCTCTTAAGCTATGCTTGGAAAAAATGGTCAGAGCAAACACCATTGGAGTTACTTGATCCAATGCTGCGCGATTCTTATTCAAGAAACGAAGTTATGAGATGCATCCATATCGGTTTATTGTGTATTCAGGAAAGTCCACATGACAGGCCTTCCATGGAAACTGTTGCACTTATGCTCAACAGTTATTCAGTTACGCTGTCAATACCTCGACAGCCACCGTCTTTCTTTCGTGGAAGAACACCTGACAGAATAAAGCAAGGGTTTAGTTCTGATCAGTCTACCACCGGATCAATTCCATGGTCTGTCAATGATGTATCCATTACTGAAGTGCACCCTCGATAA 2004 0.4092 MHIFKSPTIITTQLILVASLLASLPFPFEASPIFNSFACTDTSYYKPNSNFQTALKTLLSSLISNSTLHNGFYTVHIPLFNSPNDLKGLFLCRADITPSLCQRCVTAAANNITTLCNNQTESIIWYDECFLRYSNNSFLNQMVPATDLESDESVPDTEASQFSVFLASLLKDLAYEAVNSPSGQKFAAKEEKFLASSVYSLAECTPDLSTFDCNTCLQGAISSIGNCCDGERGARSLLPSCNIRYEFYPFYNVSAVSTQPQLPPPSSGKSNVAMIIGIVVAIVGAVALLIIGCYFLRKRERKKYKYNSTFIQGSSSIRREELTDIECLQFDFATIEAATNCFSDENKIGQGGFGVVYKGILPDGHEIAVKRLAVTSLQGAVEFKNEASLVAKLQHRNLVRMFGFCLEGREKILVYEYIPNKSLDHFLFDPAKQRELDWSKRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNAKISDFGMARIFQGDQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLNQWNDADDLLSYAWKKWSEQTPLELLDPMLRDSYSRNEVMRCIHIGLLCIQESPHDRPSMETVALMLNSYSVTLSIPRQPPSFFRGRTPDRIKQGFSSDQSTTGSIPWSVNDVSITEVHPR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1255g00008 667 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Vivi1255g00008 667 Pfam Salt stress response/antifungal 157 247 IPR002902 -
Vivi1255g00008 667 FunFam Cysteine-rich receptor-like protein kinase 10 146 250 - -
Vivi1255g00008 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vivi1255g00008 667 CDD STKc_IRAK 348 614 - -
Vivi1255g00008 667 SUPERFAMILY Protein kinase-like (PK-like) 327 635 IPR011009 -
Vivi1255g00008 667 Gene3D - 148 250 IPR038408 -
Vivi1255g00008 667 Gene3D - 34 138 IPR038408 -
Vivi1255g00008 667 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Vivi1255g00008 667 Gene3D Phosphorylase Kinase; domain 1 305 417 - -
Vivi1255g00008 667 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 665 - -
Vivi1255g00008 667 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vivi1255g00008 667 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Vivi1255g00008 667 Pfam Protein tyrosine and serine/threonine kinase 345 610 IPR001245 GO:0004672|GO:0006468
Vivi1255g00008 667 FunFam cysteine-rich receptor-like protein kinase 10 418 620 - -
Vivi1255g00008 667 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 138 - -
Vivi1255g00008 667 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1255g00008 667 FunFam Cysteine-rich receptor-like protein kinase 10 300 417 - -
Vivi1255g00008 667 Gene3D Transferase(Phosphotransferase) domain 1 418 622 - -
Vivi1255g00008 667 SMART serkin_6 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1255g00008 30 667 Receptor kinase-like Gene Family AT4G05200 48.255 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1255g00008 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1255g00008 - - cam:101512516 1007.28