Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1255g00004 ATGGTTTCCAACACCAAATTACACATCTTCTTCTTAACCCTTTTTATCATCTTCCTTAGTTTTGCAACAAACTCTTATGCAGACGACCCTCGTTTCCTCTACCAAGTTTGCTCAAAATACAGATTCACATCCAACAGCACCTACCAAACAAATCTCCATACCCTCTTATCTTCCTTATCTTCCAAAGCAACCCAAAACACCCAATTCTTCAACAACACCGTAACCAGCAAAAACCATTCAGAGCCTGCTTACGGACTATACATGTGCAGAGGTGACGTCCCTTCCTCTCTATGCTCATCATGCGTAGAAAACGCAACCCAAAGCCTCTCCACAAACACAGAGTGTTCATTTTCAGTTGCAGCAGTTATATACTACGATGAGTGCATGGTTCGGTATTCAAACCATTCGTTTTTCTCAACCGTTACTTTAGGAGCTGGTTACGTTCTCGCAAGTCCAACGAATATGTCGAACAAAGAAAGCTTCAACCGTTTGTTGTATGAGACGTTGAACAAGACTGCAGACGAAACTTCCGTGAAGAAATTTGCAACAAGAGAAGCGAAAATAAATATATTTCAGAATCTTTATTGCTTGGCTCAGTGTACACCTGATATTGATGAAAGACAGTGTAGAAGTTGTCTTGATGGTTTGATAAATTCGGATCTTCCACGGTGCTGTGCAGGAGCGCAAGGTGGACAAGTTGTGTATCCTAATTGTGTTATCAGGTTTGAGATTTACCCTTTTTACCGTTCTCTTACTACGCCACCAACACCAGCTCCGGTTTCATCGGCAAAAACCGCAGAAAGTAAAAATGGAAGATCTCGAACAGCAATCATTGTTGTAATACCCATTGTTGTTTTGGCAATAGTCTTTGCTACATGTTTCTACTGTCTAAAGAGAAAAGCTAGAAAAAGCAGGGCCAACATTCTCCTCCAAGAAAACTTTGGTCAGGAGAGTACCACTTTGGAGGGATTACAATTTGATTTAGCTATCATTGCTGCGGCAACGAACAATTTCTCCCATGACAACAAGATTGGAAAAGGTGGATTTGGACAAGTTTACAAGGGCACTCTTCGTGATGGACGAGATATAGCTGTTAAAAGGCTTTCAACAAGTTCCACACAAGGTTCAACCGAGTTCAAAAATGAGATTTTATTGATAGCTAAGCTACAACATAGAAATCTTGTGGCTTTGATAGGTTTTTGTCTAGAGGAGCAAGAGAAGATTCTCATCTATGAATATGTCCCAAATGGAAGTCTTGATTATTATCTATTCGGTAACCAAGAACAAAAGTTAAGTTGGTCAGAGCGATATAAAATTATAGAAGGAATTGCTTTAGGAGTTCTTTATTTGCATGAATATTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAACGCCTGAGTCCTAAAATTTCAGATTTTGGCATGGCTAGAATAGTTAACATTGATCAAGATCGTGGTATAACCAAGAGAATTGTGGGAACATATGGTTATATGTCTCCCGAGTATGCAATGCTTGGAGATTTTTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTATTGAGATAATCATTGGAAAAAGGAATGCAGAGTCTTATGAATCAAATCATGATGGTAAAGGCCTCTTGAGTTATGTTTGGAGACAATGGCATGAAGAAACATTGTTGACTACAATTGATCCATATATTAAAGAAAAATATTCTCAAATAGAATTCATAAAATGCATTCAAACTGGTCTATTATGCGTCCAAGAAAATCCAAATGCAAGACCTACAATGGCAAGAGTGGTTTCATATCTCACTAATCACTCAATTAAACTTCCATCTCCACAAGAACCAGCTTATTTGTCGTATGGAATGGATCAAATTAGTGTTGCACAACAGGGGTCTAGCTCGGGTCAATCTGCTAGTAGTTCTAAACCATATTCAGTTAATAACATGTCAATAAGTATATCTATTCCTCGTTAA 1995 0.3794 MVSNTKLHIFFLTLFIIFLSFATNSYADDPRFLYQVCSKYRFTSNSTYQTNLHTLLSSLSSKATQNTQFFNNTVTSKNHSEPAYGLYMCRGDVPSSLCSSCVENATQSLSTNTECSFSVAAVIYYDECMVRYSNHSFFSTVTLGAGYVLASPTNMSNKESFNRLLYETLNKTADETSVKKFATREAKINIFQNLYCLAQCTPDIDERQCRSCLDGLINSDLPRCCAGAQGGQVVYPNCVIRFEIYPFYRSLTTPPTPAPVSSAKTAESKNGRSRTAIIVVIPIVVLAIVFATCFYCLKRKARKSRANILLQENFGQESTTLEGLQFDLAIIAAATNNFSHDNKIGKGGFGQVYKGTLRDGRDIAVKRLSTSSTQGSTEFKNEILLIAKLQHRNLVALIGFCLEEQEKILIYEYVPNGSLDYYLFGNQEQKLSWSERYKIIEGIALGVLYLHEYSRLKVIHRDLKPSNILLDERLSPKISDFGMARIVNIDQDRGITKRIVGTYGYMSPEYAMLGDFSEKSDVFSFGVMVIEIIIGKRNAESYESNHDGKGLLSYVWRQWHEETLLTTIDPYIKEKYSQIEFIKCIQTGLLCVQENPNARPTMARVVSYLTNHSIKLPSPQEPAYLSYGMDQISVAQQGSSSGQSASSSKPYSVNNMSISISIPR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1255g00004 664 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Vivi1255g00004 664 Gene3D - 29 137 IPR038408 -
Vivi1255g00004 664 Gene3D - 146 247 IPR038408 -
Vivi1255g00004 664 Pfam Protein kinase domain 339 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1255g00004 664 SMART serkin_6 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1255g00004 664 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Vivi1255g00004 664 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Vivi1255g00004 664 Gene3D Phosphorylase Kinase; domain 1 298 413 - -
Vivi1255g00004 664 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Vivi1255g00004 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vivi1255g00004 664 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
Vivi1255g00004 664 Gene3D Transferase(Phosphotransferase) domain 1 414 619 - -
Vivi1255g00004 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 661 - -
Vivi1255g00004 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 298 413 - -
Vivi1255g00004 664 FunFam Cysteine-rich receptor-like protein kinase 25 146 247 - -
Vivi1255g00004 664 SUPERFAMILY Protein kinase-like (PK-like) 323 640 IPR011009 -
Vivi1255g00004 664 ProSiteProfiles Gnk2-homologous domain profile. 143 247 IPR002902 -
Vivi1255g00004 664 ProSiteProfiles Protein kinase domain profile. 338 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1255g00004 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 137 - -
Vivi1255g00004 664 CDD STKc_IRAK 344 611 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1255g00004 12 664 Receptor kinase-like Gene Family AT4G05200 44.656 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1255g00004 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1255g00004 - - vun:114191422 840.876