Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1255g00002 ATGGTAGTGCCATCAAAAACTAACAAACACTGCACTGCGTCTTTCCAACCCATCTTTCTCCTTATTCTTGTTTGCTTTATCAATTTCACAACTACTAAAGCAACGAACGGTTATGATATTCAATCTATGCCTTGCTCCGATAACAATGAAACCATTCTAAACAGTGTCTTTCAAATAAATCTCAAGACCCTTTTCTCATATTTGTCTTCCAACGCTACTGCCAACAAAGAGTTTTACAGTACCATGGTAGCAGACAAAAACAACTCCTCCAACACAGTCTATGGTTTGTTTATGTGCATGGGTGATGTTCCTGCTCATCTTTGTAGTCAGTGCGTTATAAATATGACTCATAACAATTTTTCGGACTCATCAACTAGCACTGATTGTTCCTCGTCCAAAGAGGTTATGATTTGGAATGATGATTGCAGGGTACGATATTCCAACAACTCTTTCTTCACTCATGACTTTAGTGTACTTTCTAGCTCATGCTCCTCTGTCATCTACCAGTCAAACCAGGCAATATTAGAGCACTCAGTTTCTGAAACTTGGAATGGAGTGGCAGATGAGGCAGCAAATTCTTTAATTGGCGTCAAGAAGTATGCAACAAAGGAAGTAACGTTATCTGAATTTCAAACCCTTTATTTTCAAGCTCAGTGCACACCTGACCTTTCGCCACAAGATTGTCGGAAATGTCTGAATACAACCATAACAGATTTACTTCAGTCTTGTGAAAGTGAAACTAACACTATAATAGTAGGGAGCTCTGAAAGCTACAGTTGTTACATCAGAAATGAGGTGTACCCTTTTTATCGCCCTAGTAATGCTCCAACCCCACAAGAACTCGTTCCAGCTTCCAATACAATTGATTCAAAATACTCACAGCATCCTTCTTATCTTTCCCACAATTGTTCAAGAAATGACACTGATTTACAGTTACATCTCACAACATTATTCTCTTCTTTGTCTTCAAATGCCATCTTAACTAGTTTTTTCAAGACGACTGTGGAGACGACTGAGGAGACATTATATGGCCTCTTTATGTGTCGTGGTGATATAGCCCTCTCCCATACCCTGTGTCAGTTGTGTGTCCAAGATGCAACCAAAAGAATATCATCAGAATGTCCTTCCTCCAAAGAAGCTGTAATTTGGTACGATAAATGCTTACTCCGTTATTCCTATCACTCTCTCATTTCAGATATTAATACAACCGCGCCTAAATTTCACCAATTCAATATGGCCAACACTTCTCACCTCAACATGCTGCAAAGCTTTGCTACTTGGAAACTAGCAGATATTTTATCTCAAGTGCAAAATTTGCAGACAGGAGATAGTACTCTAAAAAATTATGAAACAAAATCGGTAAAATTGAATGATCATCAAACCATTTACACTCTTGCTCAATGTACACCAGATCTGTCTGATGGGGATTGTGGCTCTTGCTTGCAAAACATTTTCCAATACGAAATTCCTTGGAATAGTTTGGCAAGTCCAGAGGGGAAAATTCTATATCCAAGCTGCTATATGATGTTTGGACTGTCCCAATTCTACAACAATGGTAATGAACCAGAGGAGTCCGGGCATGTTAATTCTCCTCCTACAACAAAAGAAAATGAAAAAAGAAGGTCGCGAACGATGATAGTTGTTGTCCCAACCATCCTTTCCACATTACTGTTAGCATTTTTCTGCTATTTGCTAAGGAAAAGAGCAAGAAAGAGCAGTTATAAAACCTTAATTCTAAAAAAAAATTTTGGTCATGAAAGTACGACTTTAGAGGGTTTGCAATTCGAAATGGCAGCAATTAAAACAGCAACAAACAACTTTTCACATGAAAACAAGATTGGCGAAGGTGGATTTGGACAAGTTTACAAGGGAATTCTTTCTGATGGAAGACACGTAGCTGTTAAGAGGCTCTCATCAAGTTCAAATCAAGGCATAGTTGAGTTCAAGAATGAAATTTTATTGATAGCTAAGTTACAACAAAGAAATCTTGTGGCATTAATAGGTTTTTGCCTAGAAGATCAAGAGAAGATTCTTATTTATGAATATGTGCCAAACGGGAGCCTTGATTACTTTTTATTTGATACTCAACAACAAAATTTAAGTTGGGATGCACGTTACAAAATTATAGGAGGAACGGCTTTAGGAATTCTTTATTTACATGAATATTCTCGTCTCAAAGTCATACATCGTGATCTTAAACCAAGTAATGTTCTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGCATGGCTAGAATGGTTCAAATAAATCAAGACCAGGGATATACAAACAAAATTGCTGGAACATGGGGTTACATGTCTCCAGAGTATGCAATGCTTGGACAATTTTCAGAGAAGTCAGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTAGAAAAAGAAATATAAGTCTTTATGATCCACATCATGTTACCGAAGGCCTCACAAGTTATGTATGGAGACAGTGGATAAATGAAACTCCATTAATCATATTGGATTCAAAAATAGAAAAGTATTCTCTAATTGAAGTTATTAAGTGCATACAGATTGGTTTGTTATGTGTTCAAGAAAATCCAAATGTCAGACCAACAATGTCAACGGTTGTTTCATATCTCAACAGTCATTCACCGGAGTTGCCATCACCACAAAAACCAGCATTTTTCATACACAATAGAATGAATCAAGAAGCAACAACACAAATGGAATCAAGTTCGGCCAATAATTTTGTATCATTTTCCGTCAATGAAATGTCTATAAGTGAATTTTATCCTCGAGAATAG 2796 0.367 MVVPSKTNKHCTASFQPIFLLILVCFINFTTTKATNGYDIQSMPCSDNNETILNSVFQINLKTLFSYLSSNATANKEFYSTMVADKNNSSNTVYGLFMCMGDVPAHLCSQCVINMTHNNFSDSSTSTDCSSSKEVMIWNDDCRVRYSNNSFFTHDFSVLSSSCSSVIYQSNQAILEHSVSETWNGVADEAANSLIGVKKYATKEVTLSEFQTLYFQAQCTPDLSPQDCRKCLNTTITDLLQSCESETNTIIVGSSESYSCYIRNEVYPFYRPSNAPTPQELVPASNTIDSKYSQHPSYLSHNCSRNDTDLQLHLTTLFSSLSSNAILTSFFKTTVETTEETLYGLFMCRGDIALSHTLCQLCVQDATKRISSECPSSKEAVIWYDKCLLRYSYHSLISDINTTAPKFHQFNMANTSHLNMLQSFATWKLADILSQVQNLQTGDSTLKNYETKSVKLNDHQTIYTLAQCTPDLSDGDCGSCLQNIFQYEIPWNSLASPEGKILYPSCYMMFGLSQFYNNGNEPEESGHVNSPPTTKENEKRRSRTMIVVVPTILSTLLLAFFCYLLRKRARKSSYKTLILKKNFGHESTTLEGLQFEMAAIKTATNNFSHENKIGEGGFGQVYKGILSDGRHVAVKRLSSSSNQGIVEFKNEILLIAKLQQRNLVALIGFCLEDQEKILIYEYVPNGSLDYFLFDTQQQNLSWDARYKIIGGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARMVQINQDQGYTNKIAGTWGYMSPEYAMLGQFSEKSDVFSFGVIVLEIITRKRNISLYDPHHVTEGLTSYVWRQWINETPLIILDSKIEKYSLIEVIKCIQIGLLCVQENPNVRPTMSTVVSYLNSHSPELPSPQKPAFFIHNRMNQEATTQMESSSANNFVSFSVNEMSISEFYPRE 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1255g00002 931 SMART serkin_6 607 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1255g00002 931 FunFam cysteine-rich receptor-like protein kinase 10 683 884 - -
Vivi1255g00002 931 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 292 926 - -
Vivi1255g00002 931 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Vivi1255g00002 931 ProSiteProfiles Gnk2-homologous domain profile. 292 396 IPR002902 -
Vivi1255g00002 931 SUPERFAMILY Protein kinase-like (PK-like) 596 911 IPR011009 -
Vivi1255g00002 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Vivi1255g00002 931 Pfam Protein tyrosine and serine/threonine kinase 610 876 IPR001245 GO:0004672|GO:0006468
Vivi1255g00002 931 Gene3D - 294 395 IPR038408 -
Vivi1255g00002 931 Gene3D - 407 515 IPR038408 -
Vivi1255g00002 931 Gene3D - 155 269 IPR038408 -
Vivi1255g00002 931 Gene3D - 39 151 IPR038408 -
Vivi1255g00002 931 ProSiteProfiles Protein kinase domain profile. 607 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1255g00002 931 ProSiteProfiles Gnk2-homologous domain profile. 406 515 IPR002902 -
Vivi1255g00002 931 ProSiteProfiles Gnk2-homologous domain profile. 156 269 IPR002902 -
Vivi1255g00002 931 Pfam Salt stress response/antifungal 308 392 IPR002902 -
Vivi1255g00002 931 Pfam Salt stress response/antifungal 193 265 IPR002902 -
Vivi1255g00002 931 Pfam Salt stress response/antifungal 428 510 IPR002902 -
Vivi1255g00002 931 Pfam Salt stress response/antifungal 49 148 IPR002902 -
Vivi1255g00002 931 CDD STKc_IRAK 613 878 - -
Vivi1255g00002 931 ProSiteProfiles Gnk2-homologous domain profile. 39 151 IPR002902 -
Vivi1255g00002 931 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 567 682 - -
Vivi1255g00002 931 Gene3D Phosphorylase Kinase; domain 1 568 682 - -
Vivi1255g00002 931 MobiDBLite consensus disorder prediction 521 541 - -
Vivi1255g00002 931 Gene3D Transferase(Phosphotransferase) domain 1 683 889 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1255g00002 296 930 Receptor kinase-like Gene Family AT4G05200 43.353 1.15e-165 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1255g00002 Pkinase 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1255g00002 - - gmx:100785282 1033.48