Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1253g00008 ATGTGCAGCATATCAAATAGAATACCCTCTCAAGAATATGGAAGACAAGAAGAAATGCATTATAAGGTTTCTGATTTGCTTGTGTTTTCAGCCACAGATGATGTAATAGCTTTCAAAGAGGCTGTTGAAAATGACAACCATGATGTCAATGAGGTAGGGTTGTGGTACGGAAGGAGAATTGGTTCAAAGGAAATGGGATATGAAGAGAGAACACCTCTCATGATTGCTTCCTTATTTGGAAGCAAGGGTGTACTGTCATATATTCTTGAAACCGGCCGGGTTGATGTTAACCAAAAGTATGGCTCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAATTCTGTTGACGCGAACGGTAACCGGTGCATTGACTTGATTCTCATGATGTCTAATAGTATCTCAGGTTCAAAGAAGAGGTTACTACTAGCCATACTAGATGAATTTAGGATGTGGGATGATATTGATGAATACAATGATTTCCTTAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATATTGGTACAGCTCGAATTGAGAAGAAAGATTATCCGATGGATCTACCCCTACCCGACATAAACAATGGGATATATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGACTTGTTCAAGAGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCAGGAGAAAATGCGAGGCGCCGTGATCCGACGATATATCAATACACCTGTGTCCCTTGTCCTGAGTTTCGAAAGGGATCGTGCAGTAAAGGGGATGCTTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAAGATGAGACTGAATGCACCCGAAGAGTCTGCTTTTTCGCGCACAAACCCGAGGAGCTTCGGCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCAAGTGCTTCTTCAATGGATTATTTCTCACTGAGCTCTCCGTCCAGTTCGACAAAATCCATGTCGACACCGCCTTTGACTCCAACTGCAGCGACTTCTCCTGCAGGTGGCATGATGTGGCCGACTCAATCTTATGCTGCAGTTCCTACTCTTCAGATGCCAAGAAGCAGATTGAAAACTGGATTGAATTCTAGAGATGATACTGAATTTCTCGAACTTGAAAATCGCCTTTTGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATTCCCTTCAAATAGACTAGCAGGTGTGAATCCTGCTAACTTTGATGACATTCTCGGTTCTCAGATACCGTCTCCACCATCAACAACTCATGTGCATCCTAATGTGACTCAGCAACTTTGGAGCTTTTCTTCTGACCTTGCCAATTCAAATGTGATTGGATCACCAAAGTTCACTGTTGATCCCTCGATGAATTCAAAAAATGATGCCCTGTCGAAGCGGAGCCAGAGCTTTATTGAGCGCAGCAGCATGGCCACCTTTAGTTCTGAACTCTCCCCTGCTACCTCGGTTGCTATGGAGCCATATACTAACTTGTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGTGATGCACTAAATAAGATGAAAAAGTCGTATACTTTCAGCTTTCGAGACCAACTAAGCAATTCAACAATGGTTGAGCAAAATGATGATGATCAAGATGTATTATTAAGGCAGGAATCATGGGTTAATTCACTTGTGAAGGATTCTCCAACAGTGCAATCGGAACAACATTGTGTTGAAGAGTAA 1848 0.4248 MCSISNRIPSQEYGRQEEMHYKVSDLLVFSATDDVIAFKEAVENDNHDVNEVGLWYGRRIGSKEMGYEERTPLMIASLFGSKGVLSYILETGRVDVNQKYGSDRATALHCAVSGCSAASAEVIKLLLDASADVNSVDANGNRCIDLILMMSNSISGSKKRLLLAILDEFRMWDDIDEYNDFLKEVGFQMEKQQQDIGTARIEKKDYPMDLPLPDINNGIYSTDEFRMYIFKVKTCSRAYSHDWTECPFVHPGENARRRDPTIYQYTCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETECTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPSASSMDYFSLSSPSSSTKSMSTPPLTPTAATSPAGGMMWPTQSYAAVPTLQMPRSRLKTGLNSRDDTEFLELENRLLQKLMIEEMTGLSFPSNRLAGVNPANFDDILGSQIPSPPSTTHVHPNVTQQLWSFSSDLANSNVIGSPKFTVDPSMNSKNDALSKRSQSFIERSSMATFSSELSPATSVAMEPYTNLSGWGSPDGKLDWSIRGDALNKMKKSYTFSFRDQLSNSTMVEQNDDDQDVLLRQESWVNSLVKDSPTVQSEQHCVEE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1253g00008 615 SMART c3hfinal6 264 290 IPR000571 GO:0046872
Vivi1253g00008 615 SMART c3hfinal6 299 322 IPR000571 GO:0046872
Vivi1253g00008 615 Pfam Ankyrin repeats (3 copies) 41 137 IPR002110 GO:0005515
Vivi1253g00008 615 MobiDBLite consensus disorder prediction 359 380 - -
Vivi1253g00008 615 MobiDBLite consensus disorder prediction 359 375 - -
Vivi1253g00008 615 Gene3D - 265 327 - -
Vivi1253g00008 615 ProSiteProfiles Ankyrin repeat profile. 103 138 IPR002110 GO:0005515
Vivi1253g00008 615 SUPERFAMILY Ankyrin repeat 32 145 IPR036770 -
Vivi1253g00008 615 FunFam Zinc finger CCCH domain-containing protein 66 222 290 - -
Vivi1253g00008 615 PANTHER UNKEMPT FAMILY MEMBER 29 603 IPR045234 -
Vivi1253g00008 615 ProSiteProfiles Zinc finger C3H1-type profile. 264 291 IPR000571 GO:0046872
Vivi1253g00008 615 SMART ANK_2a 68 98 IPR002110 GO:0005515
Vivi1253g00008 615 SMART ANK_2a 103 135 IPR002110 GO:0005515
Vivi1253g00008 615 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 289 IPR000571 GO:0046872
Vivi1253g00008 615 Gene3D - 22 161 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1253g00008 18 603 C2H2 Transcription Factor Family AT5G12850 39.450 4.20e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1253g00008 Ank_2 2.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1253g00008 - - psat:127084564 882.863