Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1253g00003 ATGTCGGATTGTTTGACGGAATTGGCAAAGTCATATGTGGAGAAATTAATAAATCGAATAGCAGCAGAATTAAGGTATATTTGTTGCTTCACGTGCATTGCTAAGGATTTTGAAGAAGAAAAAACTAGGTTGGAACCAGTAAGAACAACTATCAAGCAACGCATTGATGTGGCGGTCAGAAATGGGGAAGATGTTACTGACATTGCTCGTTTTTGGGAAAAAGAAGCTGATAGGCTCATTGAAGAAGACACCAAAGCAGAACAAAAATGTTTTTTCAAACTTTGTCCTCATTGTTTTTCAAGATATAAAAGAGGAAAAGTACTGGCAAATGAGAAGGAATATATTAAAAAATTGATAGAAGATGGAAAGACACTTCAAATTGGACTCCCTGCTATTCTTCCCGGTGTTGAACTCCATTCATCTCAAAACTATGTGTATTTTAAAAGTAGAGAATCAAAATACATAGAGCTTTTGAATGAACTCAAAGATGACAACAATTACATAATTGGACTGCATGGAATGGGAGGCACGGGAAAAACTACATTGATCAAGGAAGTGGCTAAGGAACTTGTTAAGCAATCATCCCATTTTACTTATAGCGTTGTTACAACCGTGTCATCTTCTCCTGATATCAAAAAGATTCAAGATGATATTGCTGGATCCTTGGGATTGAATTTGGATAACTGTAATGGATCGGATCGACCCAAAAAATTATGGAGCAGATTAACCAATGGTGACAAAATTCTTCTAATACTGGATGATGTGTGGGGCTATATCAATTTTGATGAAATAGGGATTCCATACAGTGACAATCGCAAAGGGTGTAGAATTGTTATAACCACGCGTGATGTGCGAGTGTGCAAAAAATTTGTATGCAATAAGACAATCCAACTAGATCTCTTATCTGAAGAAGATGCATGGATCATGTTCAAAAGGTATGCCGATCTAAATGAAACTTCCAATAAAAACTTGCTCGACAAGGGTCGTAAAATCTCAAATGAATGCAAAAGGTTGCCTATTGCCATTGCTGTTATTGCCAGTAGTTTGAAAGGTGAACAACGTCAGGATGAGTGGGATATGACCTTATATTCCTTGCAAAAACATATGTCCATGCCCGGTGTTGAAGATGAACGTGTTGAAATTTATAAATGTTTGAAGTTTAGTTATGATAATATGAAGGATGAAAAGGAGAAGCGTTTATTCCTTTTGTGTTCTTTATTTCGAGAAGACGAAGTTATTCATAATGAAAGCTTAGCTAGACTTGCCATCGGAGGAGGCCTTTTTGGAGAAGATTATGTCAGCTATGAAAATGCTCGAAGTCAAGTAGTTATATACAAAAATAAACTCGTAGATTCTTGTTTATTGTTGAAAGTTGATCATTGGGGAGTGAAAAAGCATGTCTTGGTGAAAATGCATGATTTGGTTCGCGATGCAGCTCAGTGGATAGCGAACGAAGAGATTCAAACTGTACAAGTGTATAATACAAATCAAAAGGCAATGGTGGAAAGGAAGAAAAATATTAAATATTTGTTATGTGAAGGAAAGGCAAAGGATGTGTTTTCCATGAAGCTTGATGATTCCAAGCTTGAGGTTCTGATTGTCATCATGTATCAGAGTGAAAATTCTCATACTTTAATGGGAATCGAAGTACCAGATACATTTTTTGAAAATATTAATGGACTTCGATTTTTTCAAATCACTGGTTATAATTTTTTTGGAACTCTATCATTACCTCAATCAATGCAATCGTTGAAGAATATTCGATCTATTATCCTTGAATATATTTTTTTGTGGGACATTTCTATCTTGGAAAATTTGCGAAGTCTCGAAACACTTGATTTGGTTGGCTGTGTGATTAATGAATTGCCACATGGAATTACAAAACTAGAGAAATTAAGATTGTTGAAATTGGAACGGTGTCAGATTTTAAGGAATAATCCATTTGAAGTGATTGGAAAATGCTCATCACTTGAAGAGTTGTATTTCATACAGAGTTTTAATGAGTTTTGCCGAGAAATAAATTTCCCCAAACTGCAAAGGTTTCATGTATATCATTTTTATGCTTTTAATGATGATTCATGGTCAAAGTATGTGTCTACTGAATACAGGGATGATACTTTCCTATCTGAGACAACACTCAAGTACTGTATGCAAGAAGCCGATAGTCTCAAGCTGAAAAGAATCCAGGGAGAATGGAGAAATATCATACCTGAGATTATTCCATTGGAACATGGTATGAATGATCTGGTTGAGCTTTCTTTAAGTTGCATTTCACAATTTAAGTGCCTCATTGACATTAGGCATACTTATTCTCCAGTATCCGATGTCTTCTCCAAGTTGGTTGTACTAACTTTGAAAAATATGGAAAATTTGGAAGAATTGTACAATGGTCCTCTTTCCCTTAACTGTTTTAAGAGTTTAGAGAAGCTATTTGTCAATGATTGCAAACACATTCGAAGCTTATTTAAGTGCAACTTAAACTTATGCAATCTAAAAGAAGTATCATTGGTGGGATGCCCAATGTTGATCTCAATATTTGAACTATCAACTGCTTGTAACCTAGAGTTGCTGGATATAACAGACTGTGAGCATCTTGAATACATAATAGTTGATGATGATAGCAAAAGTCGGGACCAAATGTTTCTGAAACTGAAATTTCTTAAAATCGAGAAGTGTCCAAAATTTGAAATAATACTTCCGTTTGTCTCTGCTGATGATCTTCCGGCACTAGAATCCATCATACTGAGAAGTTGTGATAAGGTGGAATACATATTTGGTCAAGATGTCAAGCTTGGTTCCCTAAAATTTATGGAGCTTCAGTGTGTACCCAATTTAATTGACATATTTCCAGAATGTAGTCCTACCAAGTCTTTGTCCATTAAGAGGTCATCATCCATGCCACCAACACAATCAGATCATATCAAATGCAACTTCTTTTCATTGACTGATATATATTGTTGTGGGAAGAAATTGAGGAGTACCACGAGCACTAAAATCTCATTGGTTAATGAGAATCAGCCGCAAAAAAAATTAATGGAATCAAATTCATATTGCCTTGACATAAATACATGGAAGCGTGTTCAATGTCTTTCAAAACAGACAATGTTTTTGTGCAATGTTAAAGAGATTGAGTTGACTCAGTTGAAGAAGATAAAATCAGTATTTATCCTATCTATTGCTCCAAAAATGTTGTTGGAAACTTTGACAATCAAGAACTGTGATGAATTGAAGCACATAATAATAGATACTGGAGATCATGACATAGCTGATGGCAATAATTTGTGCAACGTCGTCTTTCCAAATTTGAAAAGGATTTCCATTGAAGATTGCAGACAATTAGAATACATTTTTGGACACTGCATTGATGATCTTCAAAATGACACTGAGATTCAACTTCATCTTTCTACATTGGAGTGTTTCTATCTTTCCAATCTACCAAGTTTAGTCGCCATGTGTCCCAAACAATATCACATAACATGTTCACCTTTGAAAGAACTTGTACTCAATAACTGCTTGCAAGTTGCAAATATGAAACCTATTGGTGATTTCATACCTCATCATTTGGTTTCAAGATCTATCCATGGTATAGTCATGAAGGAATTGAGTGGGAGCATGGAAAGTTTGCTGACTTTGGAAAGACTTGTGATAAATAAGTCCAATGTAAAAAGTATCGTTTGTCTTAATGAAGTAAAAGAACAAGTAGTGAACTTAGATTTGAAACACATTGACCTGGAGGATGTTTACGTCATGTTGTGTCCTTTTTTGGGTTTCAAAAATTCTTGTTCCCTCCTGAATTTAACAAAGGTAGAAATAGTGCGATGTGAAAAATTAGAAATGATTTTTTCTAATTCTATCTTAAAATATATACCACAATTAATTTATCTAAAAATAAATGAATGTGGGGAGTTGCAGCATATCATTGAAGATGATTTGGAAAATCAAAATGTGTCAAATTCTTCGTCCTCAGGGACATGCTTCCCAAAGTTAATAGTGCTTATTATAGAAAAGTGCAATAAGTTGAAATATGTGTTTCCAAACTCCATATGTAAAGAGTTTCCTGAGTTACAGGTTCTAATCATAAGAGAAGCAGATGAGCTAGAGGAAATATTTAAAACTTGTGAAGGTAAGAGAATTGAGAAAGTTCATACTCCAAATTTGAAATTTGTAACAATTGTGAACCTACCAAGCTTCTTCCAGACACAAGGAATTCTTTTTCAAACAGTACAATATCGTTTGGTAAAAGATTGTCATGAACTCTCTCTGACTTCAACATCAATACCTGGCTTCTTTGATATTTTTTCCAATTCGGACTTCATATCAGAGAATGATTATTTATATGATCTATTTAATCGATTAATAAACGAGTACGAAAGCTACAAAGAAAGGGAAAGTTTTCCCTCTAAGATTGACGATGAAGCAACATCAGAATACGAGTTGACATATCCACAGATAGGGGATGATTTTGTTGAAGAAGTTCCTAATTTAGAGATACCGTCTGTAGCAATATTGCCATCCAATTTTGAAGAGTTGATGAACCAACAACAATCACTTGGAGAATCTCATACAATTTTAGAAACAAAGAATGAGTCACCTGTTGCTCCTAAGCAAAAGGGTACTGAGATACTAGTTGATGAAGGAACTACATCAATTAATGCTAAGACAGGAACATCCTTAACTCATTCAAAATCACTTCGTTCGTCATCCGGTCCATTAGTTACTTCTGAGCGTAAAACATCTCCACAAGAACATGATCCTGGCCAAATAGACTTACCTTCTTTTTCACATTCAACAACTGGGCCTCTTACCCTTGAAGATGTTGATCTTGGAGACTCACGGGAAACATCTCAGACTAATAATCAAGTCTCTCTAAATGATGATCATGCTTTGATGAAAGTAAGTTCACTTATTGAGGAACAGATTCCTAATGATAACGAAATAATAGTATCCAAATCTAAGCTCTCTTCTTTTGCATCTCAATTTCCTTCAACACCTTCTCAAGGAGACTCTTCTGAAGAAGATTTTAGTTCTACTTTGCTTGTCCCGGAGGAACTTGAGCAACTAGTCTTGAAGAAACATTTGCATCATGAGAACTTGTCTTTGTTGACTGATTTCCTTGTGAAGCATCCTTCTGTTTTTTTAAGGGACACTTCACTTAGTAATAGATACAAGGGTTGTGCCTACAACTTTCTAGCTGAGCTATTGAAATTTCTGCAAACACATAGTGTGTTGGATGTGTTAGGCTCAAGTCACTCTGAATTTGTTGAATTATTGCAAGACGCACGCAGATTTCCTTTTGATAAGGAATGGTTGGATGTTATCGAAAAGCGTGTTTTGTTTCCAGGTTTACAAGTCTCTCAAGCTGCATTGCAAAAGTTGTTGGACTCGAAACACATCTTAACTGAGCATGTGAAGGACCTGAAGCATCAATTGGCTTCCTCTGAAGCTGTTTTGGAGAGTATCACTCAACAAGAGGCACAAATTTTAGAAACTCGAGCTACTTTAAGTCATCCTATCGGTTATTAG 5523 0.3534 MSDCLTELAKSYVEKLINRIAAELRYICCFTCIAKDFEEEKTRLEPVRTTIKQRIDVAVRNGEDVTDIARFWEKEADRLIEEDTKAEQKCFFKLCPHCFSRYKRGKVLANEKEYIKKLIEDGKTLQIGLPAILPGVELHSSQNYVYFKSRESKYIELLNELKDDNNYIIGLHGMGGTGKTTLIKEVAKELVKQSSHFTYSVVTTVSSSPDIKKIQDDIAGSLGLNLDNCNGSDRPKKLWSRLTNGDKILLILDDVWGYINFDEIGIPYSDNRKGCRIVITTRDVRVCKKFVCNKTIQLDLLSEEDAWIMFKRYADLNETSNKNLLDKGRKISNECKRLPIAIAVIASSLKGEQRQDEWDMTLYSLQKHMSMPGVEDERVEIYKCLKFSYDNMKDEKEKRLFLLCSLFREDEVIHNESLARLAIGGGLFGEDYVSYENARSQVVIYKNKLVDSCLLLKVDHWGVKKHVLVKMHDLVRDAAQWIANEEIQTVQVYNTNQKAMVERKKNIKYLLCEGKAKDVFSMKLDDSKLEVLIVIMYQSENSHTLMGIEVPDTFFENINGLRFFQITGYNFFGTLSLPQSMQSLKNIRSIILEYIFLWDISILENLRSLETLDLVGCVINELPHGITKLEKLRLLKLERCQILRNNPFEVIGKCSSLEELYFIQSFNEFCREINFPKLQRFHVYHFYAFNDDSWSKYVSTEYRDDTFLSETTLKYCMQEADSLKLKRIQGEWRNIIPEIIPLEHGMNDLVELSLSCISQFKCLIDIRHTYSPVSDVFSKLVVLTLKNMENLEELYNGPLSLNCFKSLEKLFVNDCKHIRSLFKCNLNLCNLKEVSLVGCPMLISIFELSTACNLELLDITDCEHLEYIIVDDDSKSRDQMFLKLKFLKIEKCPKFEIILPFVSADDLPALESIILRSCDKVEYIFGQDVKLGSLKFMELQCVPNLIDIFPECSPTKSLSIKRSSSMPPTQSDHIKCNFFSLTDIYCCGKKLRSTTSTKISLVNENQPQKKLMESNSYCLDINTWKRVQCLSKQTMFLCNVKEIELTQLKKIKSVFILSIAPKMLLETLTIKNCDELKHIIIDTGDHDIADGNNLCNVVFPNLKRISIEDCRQLEYIFGHCIDDLQNDTEIQLHLSTLECFYLSNLPSLVAMCPKQYHITCSPLKELVLNNCLQVANMKPIGDFIPHHLVSRSIHGIVMKELSGSMESLLTLERLVINKSNVKSIVCLNEVKEQVVNLDLKHIDLEDVYVMLCPFLGFKNSCSLLNLTKVEIVRCEKLEMIFSNSILKYIPQLIYLKINECGELQHIIEDDLENQNVSNSSSSGTCFPKLIVLIIEKCNKLKYVFPNSICKEFPELQVLIIREADELEEIFKTCEGKRIEKVHTPNLKFVTIVNLPSFFQTQGILFQTVQYRLVKDCHELSLTSTSIPGFFDIFSNSDFISENDYLYDLFNRLINEYESYKERESFPSKIDDEATSEYELTYPQIGDDFVEEVPNLEIPSVAILPSNFEELMNQQQSLGESHTILETKNESPVAPKQKGTEILVDEGTTSINAKTGTSLTHSKSLRSSSGPLVTSERKTSPQEHDPGQIDLPSFSHSTTGPLTLEDVDLGDSRETSQTNNQVSLNDDHALMKVSSLIEEQIPNDNEIIVSKSKLSSFASQFPSTPSQGDSSEEDFSSTLLVPEELEQLVLKKHLHHENLSLLTDFLVKHPSVFLRDTSLSNRYKGCAYNFLAELLKFLQTHSVLDVLGSSHSEFVELLQDARRFPFDKEWLDVIEKRVLFPGLQVSQAALQKLLDSKHILTEHVKDLKHQLASSEAVLESITQQEAQILETRATLSHPIGY 1840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1253g00003 1840 Coils Coil 69 89 - -
Vivi1253g00003 1840 SUPERFAMILY RNI-like 1199 1368 - -
Vivi1253g00003 1840 MobiDBLite consensus disorder prediction 1542 1576 - -
Vivi1253g00003 1840 PRINTS Disease resistance protein signature 168 183 - -
Vivi1253g00003 1840 PRINTS Disease resistance protein signature 242 256 - -
Vivi1253g00003 1840 PRINTS Disease resistance protein signature 335 349 - -
Vivi1253g00003 1840 PRINTS Disease resistance protein signature 627 643 - -
Vivi1253g00003 1840 Gene3D Ribonuclease Inhibitor 1033 1441 IPR032675 -
Vivi1253g00003 1840 Coils Coil 1803 1823 - -
Vivi1253g00003 1840 Gene3D Ribonuclease Inhibitor 465 691 IPR032675 -
Vivi1253g00003 1840 Gene3D Ribonuclease Inhibitor 706 970 IPR032675 -
Vivi1253g00003 1840 SUPERFAMILY L domain-like 470 959 - -
Vivi1253g00003 1840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 404 IPR027417 -
Vivi1253g00003 1840 Gene3D - 135 297 IPR027417 -
Vivi1253g00003 1840 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1091 1386 - -
Vivi1253g00003 1840 Gene3D - 300 393 IPR042197 -
Vivi1253g00003 1840 FunFam Probable disease resistance protein At1g61300 136 295 - -
Vivi1253g00003 1840 Pfam NB-ARC domain 155 391 IPR002182 GO:0043531
Vivi1253g00003 1840 MobiDBLite consensus disorder prediction 1525 1606 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1253g00003 169 570 WRKY Transcription Factor Family AT5G45050 23.855 2.36e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1253g00003 - - vvo:131640805 3627.41