Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1249g00005 ATGTCTTCTCTTTCTCTCCTCTCACAACCCAATTTCCTTTCCCTCTCAACACAACCCCCAAAATCAATTCACAACACTTACGCAAACTGCAATAACTTGAAATCGCCACCTTCTTCTCTCACTCGCCGTTTTAGGAGATATGTAACGGTTTCCGAACAAGCAACGGCGGCGTCTCCGGTTGTTAGGAAGCTCTACATCGGTAACATTCCTAGGACTCTTGGGAATGATGAACTCGCTCAGATTGTTCAAGAACATGGCGCTGTTGAAAAAGCCGAGGTTATGTATGACAAATACTCTAAAAAGAGCCGTCGTTTTGCATTTGTAACAATGAAAACCGTTGAGGATGCAAACGCAGCAGTTGAGAAACTCAATGGCACTGAAATTGGAGGGCGGGAGATTAAAGTGAATATAACCGAAAGACCTTTAACAACCGGAAGTTTGCCACTTCAGGCTGAGGAAAAGGAAACACAATTTGTTGATAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAAAATGTAACATCTGATATCCTTAAAAATTTCTTCTCTGAAAAAGGAAAAGCTCTTAGTGCCAAGGTTTCACGGGTTCCCGGGACTTCAAAATCTAGCGGTTTTGGTTTTGTTACGTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCTTCTTTCAACGATGCTTTGTTAGAAGGCCAAAAGATCCGTGTGAATAAGGCGTAG 720 0.4236 MSSLSLLSQPNFLSLSTQPPKSIHNTYANCNNLKSPPSSLTRRFRRYVTVSEQATAASPVVRKLYIGNIPRTLGNDELAQIVQEHGAVEKAEVMYDKYSKKSRRFAFVTMKTVEDANAAVEKLNGTEIGGREIKVNITERPLTTGSLPLQAEEKETQFVDSPYKVYVGNLAKNVTSDILKNFFSEKGKALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNDALLEGQKIRVNKA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1249g00005 239 SMART rrm1_1 164 237 IPR000504 GO:0003723
Vivi1249g00005 239 SMART rrm1_1 63 136 IPR000504 GO:0003723
Vivi1249g00005 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 239 IPR000504 GO:0003723
Vivi1249g00005 239 PANTHER OS02G0815200 PROTEIN 57 238 - -
Vivi1249g00005 239 CDD RRM1_PSRP2_like 63 142 - -
Vivi1249g00005 239 FunFam 30S ribosomal protein 2, chloroplastic 150 239 - -
Vivi1249g00005 239 SUPERFAMILY RNA-binding domain, RBD 58 140 IPR035979 GO:0003676
Vivi1249g00005 239 Gene3D - 42 146 IPR012677 -
Vivi1249g00005 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Vivi1249g00005 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 235 IPR000504 GO:0003723
Vivi1249g00005 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Vivi1249g00005 239 SUPERFAMILY RNA-binding domain, RBD 159 239 IPR035979 GO:0003676
Vivi1249g00005 239 Gene3D - 148 239 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1249g00005 48 236 Eukaryotic Initiation Factors Gene Family AT1G22760 25.397 3.25e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1249g00005 K13126 - gmx:100811197 302.753