Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1244g00002 ATGGGTGGTGTGGGTGAGAAAAAGGAAAGGAACAAGAACGTGAATGGTTCAATATGGTCCATTTTCATGCATGCAGATACACAAGATTGGTTCCTTATGGTATTAGGTACCATTGGATCAATTGGTGAAGGCATTATTACTCCTTTGGTTTTGCTTATTAGTAGTCGTATGATGAATAATTATGGCACTTCATCTTCCACTGATGGAAACACTTTCATCCATAATATCAATAAGAATGTAGTGGCTTGGATCTATTTGGCTTGTGCATCTTTTGTTGTTTGTTTCTTTGAGGGTTATTGTTGGACAAGAACAAGTGGAAGACAAGCTGCAAAAATGAGATGCAGATATTTGAAAGCAGTTCTTAGACAAGATGTTGCCTACTTTGATTTGCAGGTCACAAGTACTTCCGAGATTATCACTAGCGTCTCCAACGACACTCTTTTAATTCAAGATGTTATCAGTGAAAAGGTTCCAAATTTTTTGATGAACATTTCATCATTCATAGCAAGCTACACAATGCCTTTTATAATGATATGGAGATTGGCAATTGTAGCATTTCCATTTAGTTTTCTTCTAGTGATCCCTGGATTAATCTATGGCAAGACATTGATGAGTTTGTCAAGAAAGATAAGAGAAGAGTATAATCAAGCTGGTACAGTTGCAGAACAAACATTATCTTCTATCAGAACTGTTTATTCTTTTGTGGGGGAACAGAAATCCATGAATGCTTTCTCTAAAGCTCTAGAAGGTACTGTGGAGTTGGGTTTAAAACAAGGATTAGCGAAAGGTTTAGCCATTGGAAGCAATGGTTTTGTGTTTGCCATTTGGGCTTTCTTGTGCTATTATGGTAGCAAAATGGTTATGTATCATGGTGCTCAAGGAGGCACAGTTTTTGCAGTTGGAGCAAGCATAACGGTCGGTGGATTAGCATTAGGAGCAAGTTTATCCAACATGAAGTATTTCTCTGAAGCAATTACGGCTGGTGAAAGAATCAAGAGAGTAATAGAAAGAGTTCCCAAGATCGATTCTAACAGCACAAAAGGTGAAATATTAGAAAATGTTTCTGGGGAAGTGGAATTTGACAATGTAGAATTTTCATACCCAACAAGACCCGAAACCGTTATCCTTAAAAAGTTCTGTCTCAAGATTCCAGCAGGAAAAGCAGTTGCGTTGGTCGGTGAAAGTGGTTCAGGGAAATCGACAGTGGTATCGTTGTTGCAACGGTTTTATGATCCAATTGGTGGAGAGATTCGTCTCGATGGAGTGGCTATTCATAAGTTTAAGATTAAATGGCTTAGATCGATGATGGGTTTGGTTAGTCAAGAACCTGCCTTGTTCGCAACTAGCATTAAAGAGAATATATTGTTTGGTAAAGAAGATGCTACTGAGGAAGAGATTGTTGAAGCTGCTAAAATTTGTAATGCTCATGATTTCATTTCGTTGCTTCCTAATGGTTACAATACTCAGGTGGGAGAAAGAGGAGTTCAATTATCAGGTGGACAAAAACAAAGGATAGCAATTGCAAGAGCAATGATTAAAAAACCACGAATCCTTCTTTTAGACGAAGCAACCAGCGCATTAGATACTGAGTCCGAACGACTGGTTCAACAAGCACTCGACAATGCAACAACAGGTTGCACGGCCATCATCATTGCTCATCGTCTCTCCACAATACAAAACGCTGACATTGTTGCTGTCGTGCACCGAGGAAAAGTTACCGAGATTGGCTCACATGACGAACTTCTCCAAAATGATAACAACCTTTACGCCTCCCTCGTCCGCCTCCAACAAACCAAAACTGAATCAGGGGAAACGGATGCAGCTACTTTGACAAACACTCAAACCGCGTCCTTGGTAGTGGACACTGCCAAATTGGTTGATGATAAAATCAGTTCTAATAATCATAATGTCAGTATCAAAAACAGCGATATCGATACTGATAAAACGGTCTCGTTTTGGAGATTACTTGCATTGAATGCTCCAGAGTGGAAGCAAGCAGTTTGGGGGAGTTTGAATGCAATGGTGTTCGGTGCAATTCAACCTACTTTTTCATTTACAATTGGATCAATGATATCTGTGTATTTTTATACAGATCATGAGGAGATTAAAAGAAAGACTAGGATTTATTCACTTGTGTTTTTCGGTTTCTCGTTGATAACTTTGGTGGCTAATATTGGACAACACTATAACTTTGCTTACATGGGAGAGTACTTGACTAAACGTGTAAGGGAGAGCATGCTTTCTAAAATACTCAGTTTTGAAGTTGGGTGGTTTGATCAAGATGAAAATTCTAGTGGTGCTATTTCTTCTCGACTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTTGGTGATAGAATGTCTTTGTTGGTACAAACTTTCTCAGCAGTAGCAACAGCATACACTATGGGTCTAATCATTTCGTGGAGGCTTGCACTTGTTACCATAGCTAGTCAACCAATTTTAATAGCTTGTTTTTATACAAAAGGTGTTTTACTCAAAAGCCTTTCAAGCAAGTCTATTAAGGCCCAAGAACAAAGTAGTAAGTTAGCTTCTGAAGCAGTTTCAAATCTTAGAACCATTACTGCATTTTCATCTCAAGATAGAATACTCAAAATGCTTGATGAGGCCCAACAAGGCCCAATTCAAGAGAATTTTCGACAAGCGTGGTTCGCTGGTTTTGGCCTTGGGTTTTCCCAATTCTTCATGTCTTGTTCTTGGGCCTTAGGCTATTGGTACGGCGGGAAGCTTTTGGCGGAAGGGAAGATAACAAAGAAAGCATTGTTTGAGAGTTTTATGGTAGTGGTGAGTACGGGCCGGGTTATAGGTGATGCTGGAAGCATGACTAAAGATATTTCCAAAGGTGCAGATACCGTGAGCTCGATCTTTGCCATTCTAGATCGGCGCACAAAAATTGAACCTGACGATGCTGATAGGTTTAAGCCCAACACTTTAACAGGCCAGATAGATTTTTCCGATGTGCATTTTGCATACCCTGCTAGGCCTGATGTGATCATATTTCAAGGTTTTTCAATTAAAATTGAAGCGGGAAAATCGACTGCATTAGTAGGGCAAAGTGGTTCGGGAAAGTCGACGATCATAGGACTAATAGAGAGATTCTATGATCCATTACAAGGAAGAGTGACAATAGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTGATAAATGGAACCATAAGGGACAACATTGCATATGGAACAACATGTGAGAAAGTTGATGAAGCTGAGTTAATAGAAGCAGCAAGAGTAGCCAATGCTCATGATTTCATAGCTGGTTTAAGAGATGGGTATGATACATGGTGTGGAGACAAAGGGGTGCAACTTTCAGGGGGTCAGAAGCAAAGGATAGCAATAGCCAGAGCTATGTTAAAGAATCCAAAAGTGTTGCTGCTAGATGAGGCAACAAGTGCACTAGATAACAAGTCAGAGAAAGTGGTGCAAGAAGCATTGGATAAGGTAATGGTTGGAAGGACAAGTGTGGTTGTGGCACATAGGTTGAGTACAATACAAAATTGTGATGTTATTGCTGTTTTAGAAAAAGGGAAGATGGTTGAGATTGGAACTCACAAAACCTTGTTGGCTAATGGACCTTCGGGTGCATATTACTCTTTGGTAAAGCTTCAAACCAAGCATGCAGTCTCAACTAATTAG 3717 0.3963 MGGVGEKKERNKNVNGSIWSIFMHADTQDWFLMVLGTIGSIGEGIITPLVLLISSRMMNNYGTSSSTDGNTFIHNINKNVVAWIYLACASFVVCFFEGYCWTRTSGRQAAKMRCRYLKAVLRQDVAYFDLQVTSTSEIITSVSNDTLLIQDVISEKVPNFLMNISSFIASYTMPFIMIWRLAIVAFPFSFLLVIPGLIYGKTLMSLSRKIREEYNQAGTVAEQTLSSIRTVYSFVGEQKSMNAFSKALEGTVELGLKQGLAKGLAIGSNGFVFAIWAFLCYYGSKMVMYHGAQGGTVFAVGASITVGGLALGASLSNMKYFSEAITAGERIKRVIERVPKIDSNSTKGEILENVSGEVEFDNVEFSYPTRPETVILKKFCLKIPAGKAVALVGESGSGKSTVVSLLQRFYDPIGGEIRLDGVAIHKFKIKWLRSMMGLVSQEPALFATSIKENILFGKEDATEEEIVEAAKICNAHDFISLLPNGYNTQVGERGVQLSGGQKQRIAIARAMIKKPRILLLDEATSALDTESERLVQQALDNATTGCTAIIIAHRLSTIQNADIVAVVHRGKVTEIGSHDELLQNDNNLYASLVRLQQTKTESGETDAATLTNTQTASLVVDTAKLVDDKISSNNHNVSIKNSDIDTDKTVSFWRLLALNAPEWKQAVWGSLNAMVFGAIQPTFSFTIGSMISVYFYTDHEEIKRKTRIYSLVFFGFSLITLVANIGQHYNFAYMGEYLTKRVRESMLSKILSFEVGWFDQDENSSGAISSRLANDANVVRSLVGDRMSLLVQTFSAVATAYTMGLIISWRLALVTIASQPILIACFYTKGVLLKSLSSKSIKAQEQSSKLASEAVSNLRTITAFSSQDRILKMLDEAQQGPIQENFRQAWFAGFGLGFSQFFMSCSWALGYWYGGKLLAEGKITKKALFESFMVVVSTGRVIGDAGSMTKDISKGADTVSSIFAILDRRTKIEPDDADRFKPNTLTGQIDFSDVHFAYPARPDVIIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLQGRVTIDGMNIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTTCEKVDEAELIEAARVANAHDFIAGLRDGYDTWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNKSEKVVQEALDKVMVGRTSVVVAHRLSTIQNCDVIAVLEKGKMVEIGTHKTLLANGPSGAYYSLVKLQTKHAVSTN 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1244g00002 1238 CDD ABC_6TM_Pgp_ABCB1_D2_like 656 972 - -
Vivi1244g00002 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 596 IPR027417 -
Vivi1244g00002 1238 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Vivi1244g00002 1238 FunFam ABC transporter B family member 1 20 357 - -
Vivi1244g00002 1238 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Vivi1244g00002 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Vivi1244g00002 1238 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1244g00002 1238 Pfam ABC transporter transmembrane region 673 936 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1244g00002 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1244g00002 1238 Gene3D - 348 597 IPR027417 -
Vivi1244g00002 1238 FunFam Putative ABC transporter B family member 8 631 977 - -
Vivi1244g00002 1238 Gene3D - 979 1237 IPR027417 -
Vivi1244g00002 1238 Gene3D ABC transporter type 1, transmembrane domain 20 928 IPR036640 GO:0005524|GO:0016020
Vivi1244g00002 1238 FunFam ABC transporter B family member 4 348 604 - -
Vivi1244g00002 1238 SUPERFAMILY ABC transporter transmembrane region 27 339 IPR036640 GO:0005524|GO:0016020
Vivi1244g00002 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1244g00002 1238 PANTHER ABC TRANSPORTER B FAMILY 5 715 IPR039421 -
Vivi1244g00002 1238 ProSitePatterns ABC transporters family signature. 1130 1144 IPR017871 GO:0005524|GO:0016887
Vivi1244g00002 1238 CDD ABC_MTABC3_MDL1_MDL2 989 1230 - -
Vivi1244g00002 1238 Pfam ABC transporter 376 525 IPR003439 GO:0005524
Vivi1244g00002 1238 Pfam ABC transporter 1008 1158 IPR003439 GO:0005524
Vivi1244g00002 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 980 1230 IPR027417 -
Vivi1244g00002 1238 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Vivi1244g00002 1238 FunFam ABC transporter B family member 4 979 1235 - -
Vivi1244g00002 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 989 1227 IPR003439 GO:0005524
Vivi1244g00002 1238 SUPERFAMILY ABC transporter transmembrane region 654 974 IPR036640 GO:0005524|GO:0016020
Vivi1244g00002 1238 SMART AAA_5 1016 1190 IPR003593 GO:0016887
Vivi1244g00002 1238 SMART AAA_5 385 573 IPR003593 GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1244g00002 21 1230 Calmodulin-binding Proteins AT2G36910 44.911 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1244g00002 K05658 - gmx:100791575 1760.73