Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1242g00009 ATGATGTTGAATCATGGGTCAAATGTTTCGGCTGAAGTGAGTGGCTGTTCAGATGAAGAACTATGGAAGACAATTGCTGGACAATTGGTGGATGTTCCTTGTGTTGGTCAAAGGGTTTTCTATTTTCCTCAAGGACACATGGAACAATTAGAGGCTTCGACGAATCAGGAACTGAATCAGAGGAGTCCTTTGTTGAAACTTCCTACAAAGATCCTTTGTCGCATCGTGAATATCCATTTACTGGCTGAACAAGAAACCGATGAAGTTTACGCGCAGATAACTTTGGTGCCGGAATCTAATCAAGACGAGCCTACAATCCCTGATCCGTGTGCCGATGAACCTCCGAGGCCGAAAATTCACTCGTTCTGCAAGATCTTAACCGCTTCGGATACTAGCACCCACGGTGGCTTCTCTGTTCTGAGAAAACATGCAACGGAATGTCTTCCTCCTTTGGACATGTCTCAACCAACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTTATGAATGGCGTTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTTCTCACAACTGGATGGAGTACATTTGTGACTTCGAAACGATTAGTCGCCGGAGATACCTTCGTGTTTTTGAGAGGGGAAAACGGGGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGTATGCCATCTTCCGTGATTTCTAGCCAAAGCATGCATTTAGGAGTTCTTGCAACTGCCTCCCATGCCGTTGCAACTCAGACTCTTTTCGTTGTATATTATAAGCCGAGGACGAGCCAGTTCATCGTAAGCGTGAACAAGTACTTGTCAGGCATCAATAATAAGTTTGCCGTCGGCATGCGGTTCAAGATGAGGTTTGAGAGTGACGATTCTGCCGAGTCCGACAAAAGATTCTCTGGTACCATAGTTGGAGTAGAAGATATCTCTCCCCATTGGGCAAACTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACCTGCGGCTATTCCAAGACCCGATAGGGTTTCACCATGGGACATAGAACCATTTGTTTCTTCAGCTTCGACACCGACCGTTCAACCTACAGCTCCAAAGACGAAGCGGCCTCGACCAACCAATGAAACTCCTGACGTTGACACAACATCAGCCGCGTCTATTTTCTGGGATGCTAGGATGGCACAAACTGATAAGACACATCGTAGCGTTTTAGCCGAAAGCAAAAAAGACGATAATAATACTAGTATGTGGCATCATAAGCAAACCGATATGATGAATACTAAAAATAGCAACAACAACAACGCTTTATTGAGGAATCATACAGAAGGAAGTTGGCTATCGTCTCCACGTTCCACCTGTCCTTCTCATTTGCATCACGACACAACCGATGATAGCAAGACTCTCCCAACCTGGCCTGTTTCGCAGTCTCAATCATCTATACCGAACGCTGATCATGTGCTTGATCAAGTTGATAAAGACAACAAAGTCGAGACAGCTACGGGTTGTCGATTGTTTGGAGTAGAACTTATTGATCATTCAAAAAACTCAGCTGCTGTAGGTAAAACATCTTCACATGCAGTAAATGTAACCGGAGCAACCGTGGAAGTTAGTTCCAGCACCATGTCCAGCACCGATACCGGCCGTAAGTCCGACATCTCAAAGGCTTATACGGAGCAGAAGCAAGAATCGCAACAAGTATCGGCGAAGGAGACTCAGAGCAAGCAAATTTGTAGTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTTGGTCGAGCGGTGGATTTAGCAATGTTGAACGGGTATGATCAACTTATCAGCGAATTAGAAGAGTTGTTCGACATAAAGGGACAGCTTCAACATAGAAACAAGTGGGAAATCGTCTTCACCGATGACGAAGGAGACATGATGCTTGTCGGAGACGATCCATGGCCTGAATTCTGTAACATGGTAAAAAGAATCTTCATTTGTTCAAGCCAAGATGTGAAGAAGATGAAATCCGGAAGCAAATTACCAGTCTCTTCTTCGATCGAAGAAGGGACCGTAATAAGCTCAGACACAACCGAACGATGA 2079 0.4521 MMLNHGSNVSAEVSGCSDEELWKTIAGQLVDVPCVGQRVFYFPQGHMEQLEASTNQELNQRSPLLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQDEPTIPDPCADEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSGINNKFAVGMRFKMRFESDDSAESDKRFSGTIVGVEDISPHWANSKWRSLKVQWDEPAAIPRPDRVSPWDIEPFVSSASTPTVQPTAPKTKRPRPTNETPDVDTTSAASIFWDARMAQTDKTHRSVLAESKKDDNNTSMWHHKQTDMMNTKNSNNNNALLRNHTEGSWLSSPRSTCPSHLHHDTTDDSKTLPTWPVSQSQSSIPNADHVLDQVDKDNKVETATGCRLFGVELIDHSKNSAAVGKTSSHAVNVTGATVEVSSSTMSSTDTGRKSDISKAYTEQKQESQQVSAKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLNGYDQLISELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVKKMKSGSKLPVSSSIEEGTVISSDTTER 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1242g00009 692 Gene3D - 576 668 - -
Vivi1242g00009 692 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Vivi1242g00009 692 SUPERFAMILY CAD & PB1 domains 581 656 - -
Vivi1242g00009 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1242g00009 692 FunFam Auxin response factor 283 356 - -
Vivi1242g00009 692 MobiDBLite consensus disorder prediction 538 575 - -
Vivi1242g00009 692 Gene3D - 283 358 - -
Vivi1242g00009 692 SUPERFAMILY DNA-binding pseudobarrel domain 111 251 IPR015300 -
Vivi1242g00009 692 FunFam Auxin response factor 575 668 - -
Vivi1242g00009 692 MobiDBLite consensus disorder prediction 669 692 - -
Vivi1242g00009 692 MobiDBLite consensus disorder prediction 443 480 - -
Vivi1242g00009 692 Gene3D - 119 223 IPR015300 -
Vivi1242g00009 692 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Vivi1242g00009 692 SMART B3_2 122 224 IPR003340 GO:0003677
Vivi1242g00009 692 MobiDBLite consensus disorder prediction 558 575 - -
Vivi1242g00009 692 MobiDBLite consensus disorder prediction 353 381 - -
Vivi1242g00009 692 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1242g00009 692 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Vivi1242g00009 692 FunFam Auxin response factor 120 224 - -
Vivi1242g00009 692 Pfam AUX/IAA family 552 664 IPR033389 -
Vivi1242g00009 692 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1242g00009 19 673 B3 DNA Binding Superfamily AT4G23980 57.186 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1242g00009 AUX_IAA 1.3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1242g00009 K14486 - gmx:100779003 1076.23